Lates calcarifer (barramundi perch): 108882560
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Entry
108882560 CDS
T04895
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108882560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108882560
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108882560
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
108882560
NCBI-ProteinID:
XP_018530628
UniProt:
A0A4W6GA82
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Position
LG6:8084296..8095479
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AA seq
928 aa
AA seq
DB search
MSKRRERADTEADTKKPKQELRAKSSAAQVRAKKKDAGNSITEEEEKLKRKVKPKSRLSS
KTTSRNNSSSKSTATTAAADVKTSRYFQSPVKEEVDSEDDFDMGTSPPLKLNCKKLEKKE
KEEEEDSEEDEDDWEEVEELAEPLGPVEPPEPALPSQPVEIEIETPEVRKKQKRQAEFES
YLRRMMNRYKKDLLIDTHKVHLMCLIASGMFRNRLCSEPDLLAITLSLLPSHFGMVAKER
IDQNYLSGLLKWFRATFTLNPSLPYEERPDPQALLERRLASLSARNHEEMTHLFLLVLRS
LQLFCRLVLSLQPIPFKPPSAKGKGAITSTGKSHTNQETSKTTSPEPKVSPGSKRPAGEG
KAKGDRGGKKAKTKEIKEEEEEEKAITSGGQRPKNSKRRSVASKVTYKEESNSEGEEGLS
EEEFQVTSEEDSEDSESEANSTKGKKGRGKSKAKVTNNKNTAAPKRRSGGGKKQVKGKGE
EEEDDDEEGEGTANNGTKRRSGKKKEGPGADEWLEVYLEKTSSWVCVDVEHGVGMPHLCS
QNATAPVTYVVSVDGDGFVKDLGRKYDPTWMTSSRKRRVDEEWWEETLEPLLGPEDEKDM
KEDKELQNKLLSKPLPISITEYKDHPLYALKRHLLKYEAIYPPTATVLGYCRGEPVYSRD
CVHTLHSRDTWLKEARTVRLGEEPYKMVKGFSNRSRKARMMSEQKDEKDLPLFGEWQTEE
YQPPIAVDGKVPRNDYGNVYLFKPCMLPVGCVHLRLPNLHRVARKLDMDAAPAVTGFDFH
GGYSHAVTDGYIVCEEHEEVLRAAWVEEQELQKQKEKEKKEKRAISNWTLLVKGLLIRER
LKQRYGKKNQGLGSLANGDEAGGFSSDEEAVEGGSPGAKTASEILAMSWPQNRQAEEDGG
NTSGLKKKSMTKREKKGQEKHLFPFEKA
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggagagagcgcgcagacacagaggccgatacaaagaaaccgaagcaagag
ctgagggcgaagagcagcgcagcacaagtgagagcaaagaagaaagatgcaggtaacagc
atcacagaggaagaggagaagctcaagaggaaggtcaaacccaagtcacgtttgtcctcc
aaaacaacatcaaggaacaactcttcttccaaatccaccgccaccaccgctgctgctgat
gtcaaaaccagcagatacttccagtcaccagtgaaggaggaggttgacagtgaggatgac
tttgacatggggacctcaccaccactgaaactgaactgcaagaaactggagaaaaaagaa
aaagaagaggaagaggacagtgaggaagatgaggatgactgggaggaagtggaagagcta
gctgagccgctgggtccagttgaaccaccagaacctgccctgccctctcagcctgtagag
atagagattgagactccagaagtcaggaaaaaacagaagaggcaggcagagtttgagtca
tatctgaggcggatgatgaacagatacaaaaaagacctgctgatagacacacacaaggtc
catctcatgtgcctgatagccagtgggatgtttcgcaaccgtctgtgcagtgaaccagac
ctgttggccatcactctgtcgctgctgccctcccactttggcatggtcgccaaggaacgc
atcgaccaaaactacctctctggactgctcaaatggtttagagcaaccttcaccctcaac
cccagtcttccctacgaggagcgtccagacccccaggctctactggagaggcggctggcc
agcctttcagccaggaaccatgaggaaatgactcatctgttcctgttggtcctgaggtct
cttcagctcttctgccgattggttctttctctacagccgattcctttcaaacccccttca
gccaagggcaaaggggctataacttctacaggaaagagccacacaaaccaagaaacctcc
aagaccacctctcctgagccaaaggtctctcctggcagcaagagaccagctggagagggg
aaggccaaaggggacagagggggaaagaaagcaaagacaaaagaaataaaggaggaggag
gaagaggagaaggctatcacatcaggaggacagaggccgaagaactcaaaacgccgcagt
gtcgcctcaaaggtcacctacaaggaggagagcaacagcgaaggggaagaggggcttagt
gaggaagaatttcaggtgaccagtgaggaggacagtgaggattcagagagtgaggctaat
tccacaaaggggaagaaggggagagggaagagcaaagccaaagtgaccaacaataaaaac
acagcagctccaaagagaagaagtggtggaggcaagaaacaggtgaaaggcaagggggag
gaagaagaggacgatgacgaggagggagaaggaacagcgaacaatggaacaaagcgaagg
agtgggaagaagaaagagggccccggagcggacgagtggttggaggtgtatctggaaaag
acgtcctcctgggtttgcgtggatgttgaacacggtgtcgggatgcctcacctctgctcc
cagaatgctacagcgccggtcacgtacgtggtgtcggtggacggggatgggtttgtgaag
gacctggggaggaagtacgaccccacctggatgacctcatccaggaagaggcgggtggat
gaagagtggtgggaggaaacgctggagccgttgttgggacccgaggatgaaaaggacatg
aaggaggacaaggagctccaaaataaacttctgagcaaacccctgccgatctccataacg
gagtataaggaccacccgctgtacgccttgaagagacacctgctcaagtatgaagccatc
taccctccaacagctactgtactgggatactgcagaggagagccggtctactccagggat
tgtgtgcacaccctccactccagagacacatggctgaaagaagcacgaactgtcagacta
ggagaagagccatacaaaatggtgaagggcttctctaatcgttcccgtaaggccaggatg
atgtctgagcagaaggatgaaaaagacctgcctttatttggagaatggcaaacagaagag
taccaaccacctatagctgtggatgggaaggttccccgtaacgactatggtaatgtgtac
ctgtttaagccctgtatgttaccggtgggctgtgttcacctcaggctgcccaatctgcac
cgcgtggccaggaagctggacatggacgccgccccagcggttacaggcttcgacttccat
ggaggatactcacacgccgtgactgacggttacattgtgtgtgaggagcatgaggaggtt
cttagagcagcctgggtggaagaacaagaactacagaaacagaaggagaaagagaaaaaa
gaaaagagggcaatctctaactggactctgctggtgaaaggactccttatcagagaaagg
cttaaacagcgctacggcaagaagaaccaggggttggggagcctcgctaacggagatgaa
gccggaggattttcatctgatgaggaagcggttgagggtggaagtcctggagctaagact
gcatctgaaattctggccatgtcctggccccaaaatagacaagcagaggaggatggaggg
aacaccagtggactgaaaaagaagtcgatgacaaaacgagagaagaaggggcaagagaaa
catctgttcccctttgagaaagcgtaa
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