Lates calcarifer (barramundi perch): 108883037
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Entry
108883037 CDS
T04895
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108883037 (lingo1a)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108883037 (lingo1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
108883037
NCBI-ProteinID:
XP_018531412
UniProt:
A0A4W6CP65
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Position
LG10:5936157..6055280
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AA seq
615 aa
AA seq
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MVAGEATGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNVQERSVMCHRKKLMTVPE
GIPAETKLLDLSKNRIRTINPDEFANFPNLEQLELSENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTEAFTHLHSLITLRLRHLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTVPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLTMIEPYSFRGLNYLKILNVSGNSLSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRRSRIR
DRKPQQKFVDEGAIVHFACQADGDPAPVIMWLSPQKKFITTKTIGRLSVLPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSLAHLHIHSYSPDWPHQPNKTFAFISNQPTETGANGTRAN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGMS
SSTVDAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtggctggggaagcgactgggcacagctacctggtggcttgctggcagcccattctg
atcctgatgctcggcactgtgctgtctggctctaccacaggctgtccatcccgctgtgag
tgcaatgttcaagaacgctctgtgatgtgccaccgcaagaagctcatgacagttcctgaa
ggcattcctgcagaaacaaagctgctggatctcagcaagaaccgcattagaaccatcaac
ccagacgagtttgccaactttcccaacctcgaacagctggagctcagtgaaaacacaatc
tccactattgaacctggagcattcaacaacctttacggcttgcggacattggggttgcgt
agcaacaaactcaagctgatccagcttggtgtcttcactggcctgagcaatctcacacag
ctggacataagtgagaacaagattgtcatcctgttggactacatgttccaggatttgtac
aacctgcggtctttagaggtgggcgataacgacctggttttcatctcccatcgggctttt
catggcctaagtagccttgagcacctgagtcttgagaagtgcaacttgtcctctgtgcca
acagaggcttttacccacctccacagtttgatcactctcaggctgcgccacctcaatatt
aatgtgatacgggattactcctttaaacggctctatcggctgaaagtgctagaaatagcc
aattggccatatttggatacgatgaccccaaattgcttgtatggattaaatctcacctcc
ctgaccattgcaaatgccaacctgaccacagttccttatgtagccctgcggcacctggtt
tatttgcggtttcttaatctttcatacaaccctatccataccattgagggaaataagctc
catgatcttctgcgtctgcaggaatttcacctggttggaggcagactgacaatgattgag
ccctactctttccgtggtctaaactacctgaagattctaaatgtgtctgggaactctctt
agcactttagaggagtctgctttccattcagttggcaacctggaaacccttgccttgtat
gataatcccctggcctgtgactgccgactgttatgggttttcagacgacgctggagactg
aacttcaataggcagcagcccacctgtgcctctcccgagtttgtccaaggcaaagagttc
aaagacttcccggatgttctgcagcctaactacttcacgtgtcgcaggtctaggattagg
gatcgcaaaccccaacagaaatttgttgacgagggtgccattgttcattttgcttgccaa
gcagatggagatcctgctccagtgataatgtggctatccccgcagaaaaagttcatcacc
accaaaacaattggaaggctctctgtgttgccagacggtacccttgaggtgcgctatgcc
cagattcaagacaatggtacgtatgtctgtatagctagcaatgcaggcggaaatgacacc
tctcttgctcacctgcacattcatagctactcgcctgactggccacaccagcccaacaag
actttcgccttcatctccaaccagcccacggaaactggtgctaatggcacaagagccaat
gtcccttttccatttgatataaagacactgatcattgcaaccacgatgggtttcatctct
tttctcggtgttgtcctgttttgcctggtactgctcttcctttggagcagaggtaaaggc
aatactaagcacaacattgagatcgagtatgtgccacggaaatcggatgctggcatgagc
agcagcacagtggatgctcctcgcaagtttaacatgaaaatgatttaa
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