Lates calcarifer (barramundi perch): 108883903
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Entry
108883903 CDS
T04895
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108883903
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108883903
09142 Cell motility
04820 Cytoskeleton in muscle cells
108883903
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108883903
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108883903
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108883903
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108883903
Hyaluronan
Extracellular matrix or blood plasma proteins
108883903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
108883903
NCBI-ProteinID:
XP_018532986
LinkDB
All DBs
Position
LG4:complement(19419894..19442439)
Genome browser
AA seq
1010 aa
AA seq
DB search
METLRGLLALLCAFLVGAQTLDQRQRFADCPVDLFFVLDTSESVALRQTPHNFYIDQIKD
FAKRFIDELRDMRHECDRILTWNSGALHYSDDIIIVRELSDMSVDRQNLKKDIDGISYIG
KGTYTDCAIRRGLAELLVGGSHHHENKYIVVVTDGHPITGYKEPCGGVQEAANEARQHGV
KVFAVAISPDQEETRLSIIATDQTYRQNFTAADDARSTKMGTIRTIIDMITNETKDVCCS
FDCSAPGGPKGPDGDLGGKGETGRPGMPGEKGDIGDVGHIGDPGPVGYSGMKGDRGARGE
KGDRGHKGYKGDKGQRGNDGTDGRKGEAGFPGLPGCKGSPGADGQQGDSGPKGDPGPYGQ
KGAKGDPGRDGVPGLPGNYGPLGPQGDRGPRGADGDKGERGDDGPPGQDGSPGERGQVGE
KGEQGSRGNRGPRGDPGEPGPRGEQGREGSAGGNGDPGEPGRQGAPGYRGDEGPPGPEGP
KGPRGIKGAPGDRGPMGERGEDGAPGNGTEGCPGFQGYPGPRGDPGEPGGKGTPGPKGDD
GEPGDSGLDNNDPGPPGPKGAKGHRGPEGRPGPPGPPGPPGTDECEILDIIMKLCSCCEC
KCASLDLAFIVDSSESIGATNFALAKDFVITVIDRLMKDQQVKFAGNESRLSVVQYSGSR
AQEIVQLGSANAATLTEFKQAVRDLHWLAEATYTGEALDFALNNTIKLMRQENRVVLVLT
DGRSDIIRDKTPNNILCGKNIRVGGLGVMDYSGRQPNQEQLEDVVCKSDPKPGFSFVLNN
FAELLDDTFLQNLTSRICQDKRCPDYKCSITFTEGADILMMMDSSASVGQKNFDISKTFV
QQLAKRFLTAKRNRGATVRVGVGQYSRSARLEQALTTNLTLLTHHIEEAAFQNDGTNVLG
AMEFAIRSLTGRGDASGGNKKLVLFSDGRSQAVTEAVLEKRVRDVADAGVELFVVAVGNQ
VNEANLRILVSKGNLNDISYAQRHLFRVADYPSLLRGVFPQTVSRRVSLR
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggagactcttagaggtctccttgcgctgctgtgcgctttcctggttggagcgcaaacg
ctggaccaaagacagagatttgcggattgtcccgttgatcttttcttcgtactggataca
tcagagagtgtcgccctcaggcagacacctcacaacttttatattgaccagatcaaagat
ttcgccaagcgcttcatagatgaactcagggatatgcgacacgaatgtgaccgcatcctg
acgtggaattcaggagcgctgcactacagtgacgatatcatcattgtgcgagagctgagt
gacatgagcgttgatcgtcagaacctgaagaaagatatcgatggtatctcatacatcggc
aagggcacatatactgactgcgccatcagaaggggtcttgctgagctgctcgttgggggt
tcccaccaccatgagaacaagtacattgtggtagtgactgatggtcatcctattactggt
tacaaagagccatgtggaggagtgcaggaggcggctaatgaggccaggcaacatggagtc
aaagtgttcgctgtcgccatctcacctgaccaggaggaaaccaggctgtcaatcattgcc
acagaccagacgtacagacagaacttcaccgctgcagacgatgccagatccaccaagatg
ggaaccattcgcaccatcattgatatgatcacaaacgagacaaaggatgtgtgttgctct
tttgactgcagtgctccaggagggcccaaaggaccagacggagaccttggtggaaaggga
gaaacaggtagaccaggaatgccaggagagaaaggagatattggtgacgtgggtcacatc
ggagatcctggtcctgttggttacagtggaatgaagggagaccgtggtgccagaggagag
aagggtgatagaggacacaaaggctacaagggagacaaaggtcaaaggggaaatgatgga
actgatggacgcaagggtgaagctggtttccctggtcttcccggctgtaaaggatctccc
ggagcagacggccagcagggagactctggaccaaagggagaccctggtccttatggacag
aaaggagcaaaaggagatcctggaagagacggtgtaccaggattgcctggaaactatgga
cctctgggacctcagggtgatcggggtcctcggggagctgatggggacaaaggagagcgt
ggtgatgatggcccacctggacaggatggatctcctggcgagagaggacaagttggagag
aagggggagcaaggttcccgtggaaacagaggtccaagaggagatccgggagagccagga
ccccgtggagagcaggggagggagggctcagctggcggcaatggagatcccggtgagcct
ggcaggcagggagctcctggctacagaggagatgaaggcccacctggaccagagggaccc
aaagggccgagaggaatcaaaggagctccaggagacagaggcccaatgggggagagggga
gaagatggtgccccaggaaatggtactgaaggttgtcctggtttccagggttatcctggg
ccccgcggggatcctggtgagccgggtggcaagggaacccctggacccaaaggagatgat
ggagagcccggagattcaggcctcgataacaacgacccagggcctccaggacctaaaggg
gccaaaggtcacagaggacctgagggcagaccgggacctcctgggcctcctggaccacca
ggaactgatgaatgtgaaattctggatatcatcatgaagctctgctcctgttgtgagtgt
aagtgtgcatctctggacctggcgtttattgtggatagctcagagagtattggtgccaca
aactttgctcttgccaaagactttgtcatcacagtcatagacagactgatgaaagaccag
caagtcaagtttgcaggtaatgagtccaggttgagtgttgtccagtacagtggatcacgg
gcacaagaaattgtccaactgggctccgccaacgccgctaccctcaccgaatttaaacag
gcagtgagagatttgcactggctggctgaggccacatacactggtgaggccctcgacttc
gctctgaacaacacaatcaaactgatgaggcaagagaaccgagtcgttctcgttctcacc
gacggccgctctgacattatcagggacaagactcccaacaacatactctgtggtaaaaac
atccgggtgggtggtttaggagttatggactactcaggccgtcagcccaaccaagagcag
cttgaagatgtggtgtgcaagagtgaccccaaaccaggcttttcctttgtcctgaataac
tttgctgagctgctagatgacactttcctacagaacctcacatccagaatctgtcaagat
aagagatgcccagactacaaatgttccatcactttcactgagggtgctgatattttgatg
atgatggacagctcggctagtgtgggccagaagaactttgacataagcaagaccttcgtc
cagcagctggccaaacgcttcctgacagcaaagaggaacaggggtgctacggtcagagta
ggcgtgggccagtacagccgaagtgcccgcttggagcaggcgctgactaccaatttgacc
ctgctgactcatcacattgaggaggcagctttccaaaatgacggcaccaacgtgttagga
gccatggaatttgccatccgcagtttaactgggcgaggggacgcatcgggaggcaacaag
aagctggtgctgttctctgacggcaggtctcaggccgtcaccgaggctgtgctggagaag
cgtgttcgtgatgtggcggacgctggggtggagctctttgtcgtcgctgtcggcaaccag
gtcaacgaggcaaacctccgcatactggtgagcaaggggaacctgaacgacatctcctac
gcccagcgccacctgttccgtgtcgcagattacccctctctgctccgcggggtcttcccc
cagaccgtctcccgcagggtctccttgcgctaa
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