Lates calcarifer (barramundi perch): 108884344
Help
Entry
108884344 CDS
T04895
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3
KO
K05044
solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108884344
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108884344
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
108884344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
MOR2-PAG1_N
DUF2207_C
Motif
Other DBs
NCBI-GeneID:
108884344
NCBI-ProteinID:
XP_050925709
UniProt:
A0AAJ8DNW4
LinkDB
All DBs
Position
LG4:4262090..4266318
Genome browser
AA seq
589 aa
AA seq
DB search
MDRFLDLWKNKARRKSKRQRRAGDRGQWASKTEYVLVVAGNVVGLGNVWRFPYLCYKNGG
GAFLVPYGLLAVVCGIPLFLLETSMGQYTQEGFITSWRKLCPLAQGIGFGELTISLCFFI
YILIEAWALFYLVFSFRSQLPWASCDNIWNTAHCLGLQTFNSSNLTNQTNTTSAAIEFWE
RRVLVVSGGIEELGSVRWELALCLLACWVFCYFSIWKGVRSSGKVAYFTATFPYVMLMVL
LIRGLTLPGAWEGIYYYLYPDLNRLANLEVWIEAGSQICFSYSLAAGTLNVLGSFNEYNN
NCYKDCFWLCLLNSGTSFVAGFVVFSVLGFMAQKQGVTIDTVVESGPGLAFIAYPQATAM
MPLPQFWTVCFFLMLILLTVDTHFVIVESFITTVSDLFPKLFRAPVRREIFVLLICLSSF
LLHLTLVTEGGIYVFQLIDFYGSTRVCQSVIAMSECLAVGWIFGADYFCNIIKDMTGQRP
SVYFKLCWKYVIPLLSLISLVLYLVEYKHLKINDRYVYPAWAYGLGWTMTLSSVLMVPLW
AAGQMCRTAGTFRERLSVLCRPAEDRAWQRRERGEEATSVELSASAVTA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggatagatttcttgatctctggaaaaacaaagccaggaggaaaagtaaaaggcagagg
agagctggagacagaggacagtgggccagtaaaactgaatatgttctggttgttgcagga
aacgtggtcggtctggggaacgtgtggaggtttccttacctctgctacaagaatggagga
ggtgcctttctggtgccatatggtttgttagctgtggtgtgtgggatacctctgtttcta
ctggaaacctcaatgggtcagtacacccaggaaggattcatcacgtcttggaggaaactc
tgtccactggcacaaggaattggatttggagagctgacgatttcactgtgtttcttcatc
tacattttaattgaggcctgggctctcttttacctggtgttctcgttcagatcccagctc
ccctgggccagctgtgacaacatctggaacacagctcactgtcttggtcttcagactttc
aattcatctaatctgacaaaccaaacaaacaccacctctgctgcaattgagttctgggaa
cggagggtgctggtcgtgtccggaggtatcgaggagctgggcagcgtgagatgggagctg
gctctgtgtcttctggcctgctgggttttctgctacttcagcatctggaaaggtgtcaga
tcatctggaaaggtggcatatttcacagccacgttcccctatgtgatgctcatggtcctg
ctcatcaggggcctgactctacctggagcttgggaaggaatttactattacctgtatcca
gatttgaatcgcctggctaaccttgaggtgtggatagaggctggatctcaaatatgtttc
tcctatagcctggcagcagggactctgaatgttctgggcagctttaatgagtacaacaac
aactgttacaaagactgtttctggctctgtctgctgaacagtgggaccagttttgttgct
ggattcgtcgtcttctctgtccttggtttcatggctcagaaacagggtgttaccatcgac
accgtagttgaatcaggtcctggtttggctttcattgcctaccctcaggctacagctatg
atgcctttacctcagttttggaccgtctgtttcttcctgatgctaattctgctcactgtt
gacacacactttgtgatagtggagagttttatcaccacagtgagcgacttgtttccaaag
ttgtttcgtgcaccagtgaggcgcgagatcttcgttctcctcatttgtctatccagcttc
cttttacatttgaccctggtcactgagggaggaatttacgttttccaactcattgatttc
tacggctcgaccagagtctgtcagagtgttattgctatgtctgaatgcctggctgtgggc
tggatatttggtgcagactacttttgtaacatcattaaggacatgacaggacagagaccg
tctgtttactttaaactgtgctggaaatacgtcatacctctgctgtcactgatttccctc
gtcttgtacctggttgagtacaaacacctcaagattaacgaccggtacgtttaccctgcc
tgggcgtacggactgggatggaccatgactctctcctctgttctcatggtgccactgtgg
gcagctggacagatgtgtcgaacagcaggaaccttcagagagcgtttgtccgtcctttgt
cgtcctgctgaagatcgagcttggcagaggagagaacggggagaggaggcgacgagtgtg
gaactgagtgcatctgcagtgacagcttag
DBGET
integrated database retrieval system
