Lates calcarifer (barramundi perch): 108884348
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Entry
108884348 CDS
T04895
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like
KO
K05044
solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108884348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108884348
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
108884348
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
108884348
NCBI-ProteinID:
XP_050925763
UniProt:
A0AAJ8B5R5
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Position
LG4:4250264..4260946
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AA seq
565 aa
AA seq
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MNRERRKAENQMRAGDRGQWASKTEYVLVVAGNVVGLGNVWRFPYLCYKNGGGAFLVPYC
LLAVVCGIPLFLLETSVGQYTQEGFITCWRKLCPLAQGIGYGHFVMKLYDFIYIIIQVWA
LFYLASSFTSKLPWASCDNTWNTVNCVGLQSLSNETVNHTMLTNTTSAATEFWERRVLVV
SGGIEELGSVRWELALCLLLCWVFCYFSIWKSIRSSGKVAYFTATFPYAMLLILLIRGLT
LPGAWEGIYFYLYPDLNRLANLEVWIEAGSQICFSYSVAIGTLSVLGSYNEYNNNCYRDC
FWLCLLNSGTSFVAGFVVFSVLGFMAQKQGVAVNTVAESGPGLAFIAYPQATAMMPLPQF
WTVCFFLMLIFLSVDTHFVTVECFIASISDLFPKHLRAPGRSEIFVLLICLFFFLTHLTL
VTEGGIYIFQLIDYYGCTRACHYFMALSQCLALAWGFGAERVIDVIEDMTGQRPCAFFKL
CWKYIIPLLTPISFILYLVGYTHLKINDRYVYPAWAYRLGWTMTLSSVLMVPLWAAGQMC
LTAGTFRERLHILCRPAEDPAQQRR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaacagagaaagaagaaaagctgagaatcagatgagggctggagacagaggacagtgg
gccagtaaaactgaatatgttctggttgttgcaggaaacgtggtcggtctggggaacgtg
tggaggtttccttacctctgctacaagaacggaggaggggcctttctggtgccgtactgt
ctgttagctgtggtgtgtgggatacctctgtttctgctggagacttcagtcggtcagtac
acccaggaaggattcatcacctgctggaggaaactgtgtccactggcacaagggatagga
tacggacatttcgtgatgaaactttatgacttcatttacattataatccaagtctgggct
ctgttctacctggcgtcttcattcacatccaagctcccctgggccagctgtgacaacacc
tggaacacagtgaactgtgtgggtcttcagagtttgtcaaatgagactgtaaatcacacc
atgttgaccaacaccacctctgctgctactgagttctgggaacggagggtgctggtcgtg
tctggaggtatcgaggagctgggcagtgtgagatgggagctggctctgtgtcttctgctc
tgctgggtgttctgctacttcagcatctggaaaagcatcagatcctctggaaaggttgca
tacttcaccgccactttcccctacgccatgctcctcatactgctcatcaggggactgact
ttacctggagcatgggaaggaatctacttctacctgtacccagacttgaaccgcctggct
aaccttgaggtctggatagaagcaggctctcagatatgcttctcctacagcgtggctata
ggaactctaagtgttttaggcagctataatgagtacaacaacaactgttacagggactgc
ttttggctctgtctgctgaacagtgggaccagttttgttgctggattcgttgtcttctct
gtccttggattcatggctcagaaacagggtgttgctgtcaacactgtagctgagtcaggt
ccaggtctggccttcattgcctaccctcaggctacagccatgatgcctttaccacagttc
tggaccgtctgcttcttcctgatgctcatcttcctcagtgtcgacactcattttgtgaca
gtcgagtgttttatcgcctcaataagcgacttgtttccgaagcacttacgtgcaccggga
cggtctgaaatctttgtcctcctcatctgtttgttcttcttcctcacacatctgaccttg
gtcactgagggagggatttacatattccagcttattgattattatggttgtaccagagct
tgtcattattttatggctttatctcagtgtctggctctggcctggggttttggtgctgag
cgtgttattgacgtcatcgaggacatgacaggacagaggccatgtgctttcttcaaactg
tgctggaaatacatcatccctctgctgacaccgatttcctttatcctgtacctggttggt
tacacacacctcaagattaacgaccgatacgtttaccctgcctgggcgtacagactggga
tggaccatgactctctcctctgttctcatggtgccactgtgggcagctggacagatgtgt
ttgacagcaggaaccttcagagagcgtttgcacatcctttgtcgacccgctgaagatcca
gcccagcagagaagataa
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