Lates calcarifer (barramundi perch): 108888245
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Entry
108888245 CDS
T04895
Name
(RefSeq) hydroxyacyl-coenzyme A dehydrogenase, mitochondrial
KO
K00022
3-hydroxyacyl-CoA dehydrogenase [EC:
1.1.1.35
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00062
Fatty acid elongation
lcf00071
Fatty acid degradation
lcf00280
Valine, leucine and isoleucine degradation
lcf00310
Lysine degradation
lcf00380
Tryptophan metabolism
lcf00650
Butanoate metabolism
lcf01100
Metabolic pathways
lcf01212
Fatty acid metabolism
Module
lcf_M00032
Lysine degradation, lysine => saccharopine => acetoacetyl-CoA
lcf_M00085
Fatty acid elongation in mitochondria
lcf_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
108888245
09103 Lipid metabolism
00062 Fatty acid elongation
108888245
00071 Fatty acid degradation
108888245
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
108888245
00310 Lysine degradation
108888245
00380 Tryptophan metabolism
108888245
Enzymes [BR:
lcf01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
108888245
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
Pyr_redox_2
Pyr_redox
AlaDh_PNT_C
NAD_binding_2
UDPG_MGDP_dh_N
DAO
NAD_Gly3P_dh_N
F420_oxidored
TrkA_N
NAD_binding_7
HI0933_like
Sacchrp_dh_NADP
NAD_binding_8
DFP
2-Hacid_dh_C
XdhC_C
Pyr_redox_3
Lys_Orn_oxgnase
Motif
Other DBs
NCBI-GeneID:
108888245
NCBI-ProteinID:
XP_018539667
UniProt:
A0A4W6CGS9
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All DBs
Position
LG5:complement(12019970..12023536)
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AA seq
309 aa
AA seq
DB search
MAFFTHQVCRGLSSSAVRAAAIKHVTIIGGGQMGAGIAQVAASTGHTVTLVDTSDDILKK
AVKGIEGSLKRVVKKKFADKPEAGEEFIQKVLQNVSVSTDAGAAAQSSDLVLEAIVENLK
IKQDLFGRLDKLAPTHTIFASNTSSLPISDIASSTNRLDRFGGLHFFNPVPMMKLVEVIG
TSATSQETFDSLLNFSKALGKTPVSCKDTPGFIVNRLLVPYVLEAIRLHERGHGSKEDID
IAMKLGAGYPMGPFELSDYVGLDTMKFIMDGWNEKDPDNPLFAPSEMLNKLVAEGKYGKK
TGEGFYKYK
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggctttcttcacccaccaggtctgcagaggtctgtcgtcctcggccgtcagagccgct
gcgattaaacatgtgacgatcatcggaggaggacagatgggagcgggaatcgcacaggtt
gctgcatcaactggtcacacggtgacgctggtggacacatctgatgacatcctgaagaag
gctgtcaagggcattgaagggagccttaaaagagtggtcaagaagaagtttgctgataag
ccagaggcaggtgaggagttcatccagaaagtcctgcagaacgtgtcagtctcaacagac
gctggggctgcagctcagagctcagatctcgtgttggaggcaatcgtggaaaatctaaaa
atcaaacaggatctctttggacggctggacaagctggcaccaacacacaccatctttgcc
agcaacacatcctccctgcccatctctgatatcgccagctccaccaacaggctcgacaga
ttcggaggtcttcacttcttcaacccagtccccatgatgaagctcgtagaggtcattgga
acctcagcaacaagccaagagacttttgattcactcctgaacttcagcaaagcacttgga
aaaacaccagtgtcctgcaaggatacacctggattcattgtaaaccgcctgcttgttcct
tatgtattggaggcaatccggttgcatgagagaggtcatggatccaaagaggacattgat
attgccatgaagctcggtgctggttatcccatgggaccctttgagctctcggactatgta
ggactggacacaatgaaattcattatggatggttggaatgaaaaggatcccgataaccca
ctgtttgctccgagtgaaatgttgaacaagttggttgcagagggaaaatatggtaaaaag
acaggagagggattctataagtacaagtaa
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