Lates calcarifer (barramundi perch): 108888731
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Entry
108888731 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM21-like isoform X1
KO
K10651
tripartite motif-containing protein 21 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108888731
04131 Membrane trafficking [BR:
lcf04131
]
108888731
04121 Ubiquitin system [BR:
lcf04121
]
108888731
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108888731
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108888731
Membrane trafficking [BR:
lcf04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
108888731
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108888731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-RING_6
Prok-RING_4
zf-Nse
DUF4988
zf-RING_10
AAA_13
Bac_DNA_binding
MobC_2
Motif
Other DBs
NCBI-GeneID:
108888731
NCBI-ProteinID:
XP_018540369
UniProt:
A0A4W6DMB9
LinkDB
All DBs
Position
LG5:608161..614413
Genome browser
AA seq
553 aa
AA seq
DB search
MSAASCLLSEDQFLCSICLDVFTDPVSTPCGHNYCKNCINQHWNTADQYLCPVCKKVFNI
KPELHINTFISEMVAKFRQQAQQKASSSSSEQQVAKPGEVSCDVCTGTKLKALKSCLVCL
TSYCETHLEPHLTVSGLKRHQLIHPVENLEDRMCTKHDKPLELFCKTDQTCVCMLCSVLD
HRTHEFVPVKEECEGKKAELEKTEAEIQQMIQKRRLKIEKIKHSVKISKDDADREKAEGV
QVFTALKESVDRGLNQLIKEMEEKQKTTEKQAEDLITELEQEISELMKRSTEVEQLSLSE
DHLHLLQNFPSLKAAPPTKDWTEVRVRPPSYEGTAVRAVVQLEETLSKEMKKLFEAELKR
VQQYAVDVTLDPDTANPWLILSDDEKQVHCGDVKKNLPDNPERFKSYISVLGKQSFSSGR
FYFEVQVKGKTKWTLGVARESIKRRGEITLSPEDGYWTIWLRNGNEYKACAGPSVRLSLK
SGPEKVGVFVDYEEGLVSFYDVDAAALIYSFTGCSFTEKLYPYFNPGFNDDGKNSVPLII
CPVSYNCKPGIWC
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgccagctgtctgctatctgaagatcagtttctgtgctccatctgtctggat
gtgttcactgatccagtctccacaccatgtggacacaactactgcaaaaactgcatcaat
caacactggaacactgctgaccagtacctgtgtccggtgtgtaaaaaggtttttaacata
aaacctgagctgcacatcaacactttcatctctgagatggttgctaagttcagacagcaa
gctcaacagaaagccagcagcagcagctcagagcaacaagttgccaaaccaggagaagtt
tcctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctg
acctcctactgtgagactcacctggagcctcatctgacagtgtcaggcctgaaaagacat
cagctgatccaccctgtggagaacctggaagacaggatgtgtacgaagcacgataaacct
ctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgctctgttttagac
cacaggacacatgagtttgttcctgtgaaagaagaatgtgaaggaaagaaggcagagctg
gagaagacagaggctgaaattcagcagatgatccagaagagacgactgaagattgagaag
atcaaacactcagtcaagatcagtaaagatgatgcagacagagagaaagcagaaggtgtt
caggtcttcactgctctgaaggagtctgttgacagaggcctgaaccagctcataaaggag
atggaagagaaacagaaaaccacagagaaacaggctgaagacttgatcacagagctggaa
caggaaatctctgagctgatgaagagaagcactgaggtggagcagctctcactctctgaa
gaccacctccacctcctccaaaacttcccatccctgaaagctgctccacccaccaaggac
tggacagaggtcagagtccgtccaccatcatatgaggggactgcggtgagagctgtggtt
cagctggaggagacgctcagtaaagagatgaagaagctgtttgaggctgagctgaagagg
gtccagcagtatgcagtggatgtgactctggatcctgatacagcaaatccctggctcatc
ctgtctgatgatgagaaacaggttcactgtggtgatgtgaagaaaaatcttccagacaac
ccagagagatttaaaagttatatcagtgtcttaggaaagcagagtttctcttcaggcaga
ttttactttgaggttcaggttaaaggaaagactaaatggactttaggagtggccagagag
tcgatcaagaggaggggagaaatcacactgagccctgaagatggttactggaccatatgg
ttgagaaatggaaatgagtacaaagcttgtgctggtccttcagtccgtctctctctgaag
tctggtcctgagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttat
gacgtagatgctgcagctctcatctactcctttactggctgctccttcactgagaaactc
tacccatacttcaatcctggctttaatgatgatggtaaaaactctgtccctctgatcatc
tgtcctgtcagttacaactgtaaaccaggaatttggtgttaa
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integrated database retrieval system
