Lates calcarifer (barramundi perch): 108888850
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Entry
108888850 CDS
T04895
Symbol
chrna11
Name
(RefSeq) cholinergic receptor, nicotinic, alpha 11
KO
K04809
nicotinic acetylcholine receptor alpha-7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04020
Calcium signaling pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108888850 (chrna11)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108888850 (chrna11)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108888850 (chrna11)
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
108888850 (chrna11)
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF5665
Motif
Other DBs
NCBI-GeneID:
108888850
NCBI-ProteinID:
XP_050923593
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Position
LG3:complement(14782940..14799145)
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AA seq
644 aa
AA seq
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MPTGCRLGDFQQLPESVLPSPLLLLASPLLPTLLLLLVLLLLFLCLRPPNIRSISSSASC
LLLLLTTRMWHSVALLLSGFFALIHGEPCQLQGPHQRNLLKNLLKDYNRMERPVGNDSHP
LTVVFSLTLIQIMDVDEKNQVLTSNMWLRMSWFDHYLQWNQSEHPGVKNLRFTTDQIWTP
DILLYNSADDDFDSTFKTNILVNSSGYAEYLPPGIFMSTCNVDVRWFPFDIQKCELKFGS
WTYDGWLLDLQMNDADTSSYMPNGEWDLIGVPGTRNEAFYDCCKEPYPDVTFVITIRRRT
LYYALNLLIPCVLLSSMTLLIFVLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSV
PLIGQYFASIMIIVGMSVIATVVVLQYHHHDPNGGNMPKWVQLVLLQWVAWFLRMKRPGE
NDDPERPPCAPHLRRCSSGSQSGSIPNPPDPTLHPLHPQNLAPLQTGPLHAGHPHLHAQS
SANNNGNLLYMGFQSMDDPSMLSEPVQRNNISAGPPRVAGSPPPHLPAQFCSSPPPPTPN
MDTGCPSTVSSGGGFGGGPGGLGGCSTAGIGDPQLQAILEEVRYMADRFREQDESESMAD
QWKFAGAVIDRLCLVAFSVFNIICTISILMSAPNFVEAISKDFV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgccgactggatgcagactgggggattttcagcagcttcctgagtctgtcctcccttct
cctctcctcctcctcgcctctcctctcctccctaccctccttctcctcctagtcctcctc
ctcctcttcctctgtctccgtcctccaaacatccggagcatctcctcttctgcctcctgt
cttctcttgctcctcaccaccaggatgtggcactcggtggctctcctcctctctggattc
tttgctctgatccacggtgagccttgtcagttgcagggtcctcaccagaggaacctgctg
aagaacctcctcaaagactacaaccggatggagcggccagtgggaaacgactcccaccct
ctcaccgttgtcttttctctcactttgatacagatcatggatgtggatgagaagaaccag
gtcttaacctctaacatgtggctacggatgagttggttcgaccactatctccagtggaac
cagagcgaacatccgggagttaaaaacctccgcttcaccacagatcagatctggaccccg
gacatccttctctacaacagtgcagatgacgactttgactccacctttaagaccaatatt
ctggtaaactccagtggctacgccgagtatctgcctccaggaatctttatgagcacatgc
aacgtggatgtacgctggtttccctttgacatccagaaatgcgagctgaagttcggctct
tggacatacgacggctggctgctggaccttcaaatgaacgatgctgacacttcaagctac
atgcccaatggagagtgggacttgataggagttcctggcaccagaaatgaggccttctac
gattgctgtaaggagccctacccggatgtgacatttgtcataacaatacggcggcgaacg
ctctactacgccctgaacctgctcatcccctgcgtgctgttgtcttctatgaccctgctc
atctttgtgctgccagctgactccggggagaagatctcactgggtatcactgtcttgctg
tctctcactgttttcatgttgctggtcgcagagatcatgccagccacgtctgactccgtc
cctctcataggtcagtactttgccagtataatgatcatcgttgggatgtcagttatcgcc
actgtggtggttctgcagtatcatcaccacgatccaaatggagggaacatgccgaaatgg
gtgcagctcgtcttgctacagtgggttgcatggttcttgcgtatgaagcgaccgggagag
aatgatgaccccgagcggcccccctgtgccccccatctgcggcgctgctcctccggctcc
cagagcgggagcattcccaaccctccggatcccaccctccatccactgcacccacagaac
ctggctcctctccaaacagggcccctccatgcgggacacccacacctccacgcccagtcc
agtgctaacaacaatgggaaccttctctacatgggcttccagagcatggacgacccctcg
atgctatcagagcccgtccagaggaataacatctcggcggggcctccgcgagtagcagga
agcccgcctccacacctgccagcgcagttctgcagctccccaccacctcctacccctaat
atggatactggctgtcccagcaccgtctccagtggcgggggctttggaggtggacccggt
gggcttggagggtgctcgactgcagggataggagacccccagctacaggccatcctggag
gaggttcgctacatggcagaccgtttccgggagcaggacgagagcgagagcatggctgac
cagtggaaatttgcaggcgctgtaatcgaccgtctctgtctggtggcgttcagcgttttc
aatatcatatgcaccatttctatcctcatgtctgctcccaactttgtggaggctatttca
aaggactttgtttga
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