Lates calcarifer (barramundi perch): 108894531
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Entry
108894531 CDS
T04895
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108894531 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108894531 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108894531 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108894531 (col9a1b)
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Others
108894531 (col9a1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108894531
NCBI-ProteinID:
XP_018548718
UniProt:
A0AAJ7Q7G4
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Position
LG16_LG22:6059651..6076641
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AA seq
927 aa
AA seq
DB search
MGGVKRNILLYSLCCCYVIPQYLCTGLHSQTVRFSSQVGIHMEQQSMCPQISIGEDRFPG
FYIMSQFHIAELARRGTVKKVTGSSPQHVAYQIGPAFNFRINTRSAYPLGLPEEFAFVAV
LRMSASTINKNWNIWQMQDVNGNEQLAVRLNGESKSLEFTFTSLDTGRQRQTVVFRALTF
LFNDQWHRVLLDVSRRSVTLFVDCVMIGSQSIPLRQKASLDGFTLIGKLKDNPVTAVPFE
LQSMLIHCDVTRARTEACYDLPARTSTDVTEVQRSEGTPGPPGPAGVPGIDGIAGERGAD
GADGPPGPDGDAGKPGSTGLPGIPGNDGLTGPIGDPGPDGPPGQKGEPGQPGPRGAAGVG
PDGPPGPPGPGGLLGEVGKVGPPGAMGVRGPQGPRGPTGPRGATGMLGSADLCPNSCPPG
ASGHPGLPGMKGHKGVKGEAGEPGKQGHKGEEGDQGAPGEVGSQGPTGPQGIRGAMGMMG
PKGEMGARGPDGDPGPQGVGGATGDRGQRGVMGELGPKGDTGVQGSRGITGVPGPKGEAG
LPGVDGREGIPGMPGAKGAIGKPGVPGEVGLQGLPGLPGAPGPKGLSGPKGDAGQPGLPG
TMGPAGKAGERGEQGEVGPAGPIGEPGDIGQQGPVGPPGKPGARGPKGDPGLPGLPGPPG
LPGAKGERGDRGEAGPKGEQGVQGDEGNPGDKGDAGEPGEPGPKGDGGNPGETGKRGPEG
SRGQPGIEGPPGSPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLA
ASLRRPESGVAGLPGKPGPPGPPGPPGDNGFPGQAGSRGLPGLKGPPGLIGVKGPKGEMG
DRGSRGPTVRGPKGQPGPPGLPGEPGKPGYGRDGRDGQRGPPGVSGQPGVPGPPGPAGPN
GYCDPSACNLQAGAAHQSLDVKGPAGN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagtcaaaagaaatatccttctgtactcattgtgctgctgctatgtgatccca
cagtatctttgtacaggactccattctcagactgtgcgattttcatctcaagttggtatt
catatggagcagcagtctatgtgccctcagataagcattggggaggatcgtttcccagga
ttttatattatgtcccagttccacattgctgagctggcgagaaggggcactgttaaaaag
gttactggatcatctcctcagcatgttgcatatcaaataggcccagcgttcaacttcaga
atcaacacacgatcagcttatcccctgggactgccggaggagtttgcatttgtggctgtg
cttcgcatgagtgccagcaccataaataaaaactggaatatctggcaaatgcaggacgtg
aatggcaacgagcagttggctgtcagactcaacggggagtctaagtctctggagtttacc
ttcacatcgctggacactgggagacagaggcagactgttgttttcagggccctgactttc
cttttcaatgatcaatggcacagagtcctgctggacgtcagcaggagatctgttaccctt
tttgtggactgtgtcatgatcggttctcagagcataccactgcgacaaaaagccagtctg
gatgggttcacgttgataggaaaactcaaagacaacccagtgacggcagttccgtttgaa
ctccagtcaatgctgattcactgcgatgtgacgcgagccaggactgaagcttgttatgac
ctcccagccaggacatcgactgatgtgacagaggtgcagaggagcgaaggaactcctggc
cctcctggacctgcaggtgtcccaggaattgatggcattgctggggaaagaggagcagat
ggtgcagatggccctcctggacctgatggagatgcaggtaaacccggctctacgggatta
cctggaattcctggaaacgatggtttgaccggccctattggagatcctgggcccgatggt
ccccccggacagaagggtgaacctggacaacctggacctcgtggggcagctggtgttggg
ccagatggaccccccggaccacctgggcctggaggacttctgggtgaagtgggaaaagtt
ggaccacctggggccatgggtgtgagagggccacagggacctcgtggaccaacagggccc
agaggtgcaactggaatgctaggcagtgctgacctgtgtccaaactcttgtccacctggg
gcctctggacatcctggtcttcctggcatgaagggccacaaaggtgtaaaaggtgaagca
ggagaacctgggaaacaaggacacaagggtgaggagggagaccagggagctcccggagag
gttggatcccaaggaccaacgggccctcagggaattcggggagccatgggaatgatgggc
cccaagggagagatgggagctcgaggtcctgatggagatccaggtccccagggtgttgga
ggagctactggggaccgaggccagaggggtgtgatgggtgagcttgggcctaagggtgac
acgggtgtgcaaggatcaagaggaatcacaggcgtgccaggtcccaagggagaggctggc
ttaccaggtgtagatggtcgcgagggtattcctgggatgccgggagcaaagggagccatt
gggaagccaggagttcctggagaggttggacttcaggggcttcctggtttgcctggtgca
cctggaccaaaaggcttaagcgggccaaagggagatgccggtcaaccaggtctgcctgga
acaatgggacctgctggcaaagcaggtgagcgtggagaacagggagaggtgggacctgct
ggacccattggtgaacctggagatataggacagcaaggccctgtaggtccacctggaaag
ccaggtgccaggggacccaaaggcgaccctggccttcctggtctccctggtcctcctggc
cttcctggggctaagggagagcgtggagatcgtggagaggcaggacccaaaggagagcag
ggagtacaaggtgatgaaggaaaccctggcgacaaaggggatgctggtgaaccaggagaa
cccggacctaaaggagatggtggtaaccctggcgagactggcaaaagaggtcctgaggga
agtcgaggccagcctggcattgaggggccacctggctcacctggaccccgtggcatgcag
ggtaacaggggtccacctggagtcagagggtcccagggacctgcgggtaaagagccaagt
gatcagcacatcaaacaagtttgcatgcgagtcatgcaagaacagctggcccagttagca
gctagtttaaggaggccagagtctggtgtagctggtttacctggaaaacctggacctccg
ggacctcctgggcctccaggagacaatggcttccctggacaggctggatcaagaggcctt
ccaggactcaaagggccaccaggacttattggagtgaaaggacctaaaggtgaaatggga
gaccgaggctccagagggcccactgtacgaggacctaaaggtcagccaggacctcctgga
cttcctggtgagcctggcaaacctggctacggtcgagatggtcgtgatgggcagagggga
cctcccggcgtttctggacagcctggtgtgcctgggcctcctggtccagccggtcctaat
ggttactgtgacccatcagcttgcaacctccaggcaggggccgcccaccagtctctggat
gtgaagggacctgcagggaactaa
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