Lates calcarifer (barramundi perch): 108895568
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Entry
108895568 CDS
T04895
Symbol
si:ch211-278j3.3
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF19B
KO
K11973
E3 ubiquitin-protein ligase RNF19B [EC:
2.3.2.31
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108895568 (si:ch211-278j3.3)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108895568 (si:ch211-278j3.3)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108895568 (si:ch211-278j3.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IBR
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108895568
NCBI-ProteinID:
XP_050927859
LinkDB
All DBs
Position
LG7_1:12547559..12572539
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AA seq
647 aa
AA seq
DB search
MKRPKQQTGPLSFLNFFSRKPKSEPRPEKPVEAWPKEEVAITLTPSEHPEQDISITAEEA
GESRVSGAERGEGGGPPAAAEAGEDGAATAECVGGGSSGSTGVLSLSSSSQEQLLDEHLE
ECPLCLLSQPRCHFPRLTSCSHRACSDCLRQYLRIEISESRVGIACPQCPETLAPLDVRA
ILDDRALLERFEEYQLRRFLAADPDTRWCPAPDCSYAVIAYGCAECPKLSCGREGCDTEF
CYHCRQLWHPNQTCDQARRQRARHTSGGNDASTLYVFNEEPGGDAEEIKACPRCGAYIMK
TNDGSCNRMNCTVCACQFCWLCMQEITDVHYLSPSGCTFWGKKPWSQTRKVLWQVGMLLG
APVVISLIAGIAIPVIIVGIPIYMGRKVHGRCKKNNISGSKHYLTVASGVMMSVFVSPVI
AAVTVGVGVPLMLTYVYGVVPMSLCRNGWCRPQSEPPETHKIQLEDLASFSDHWTGQNNP
TLSDTSVQEVRVSVQEVGVLPSTSTSPPDLDSYAGLDEAAKRHEYTEQDSPSDCEVVIVP
DSKLDDTQALPLREGTNIEVRVEIETHPRGARQSSLSSILSSRSLSAESLGHPQSQSQDY
LCASELEERREGGGGKGEEQEGREKPGGEVAGRDEGTGFPVFDIDGV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcccaagcagcagacggggccgctgagtttcctcaacttcttcagcagaaag
cccaaatcagagccgcggcccgagaagcccgtggaagcctggcccaaagaggaggtggcc
atcaccctgacccccagcgagcatccagagcaggacatcagcatcacagcagaagaggct
ggagaatcaagagtttctggagcagaaagaggagaaggaggaggtccaccagcagcggct
gaggcgggcgaggacggtgccgccacggccgagtgtgtgggcgggggcagcagtggctcc
acgggcgtcctatccctctcctcctccagccaggagcagctattggatgagcacctggag
gagtgcccactgtgcctgctcagtcaaccacgttgccacttcccgcgactcacctcctgc
tctcaccgagcgtgctccgactgcctccgccagtacctgcgcattgagatatctgagagc
agggtgggcatcgcgtgcccgcagtgccccgagacgttggcgccgctggacgtccgggcc
atcctggatgaccgggcgctgctggagcggtttgaggagtaccagctgaggcgttttcta
gctgctgatccagacacacgctggtgcccagcgcctgactgcagctatgcagtgatagct
tatggctgtgcggagtgtcccaagctgagctgtggccgcgagggatgcgacacagagttc
tgctaccactgccggcagctgtggcaccccaaccagacgtgtgaccaggcccggcgtcag
cgagcccgccacacctcgggtggcaatgatgcctccacgctatacgtcttcaatgaagaa
cctggaggagatgcagaggagatcaaagcgtgccctcgctgtggtgcctacatcatgaag
accaatgatggcagctgtaaccgtatgaactgcactgtgtgtgcctgtcagttctgctgg
ctttgtatgcaggagatcaccgatgtgcactacctcagtccctcaggatgtacattctgg
gggaagaagccatggtcgcaaacccgcaaggtactgtggcaggtgggcatgttgctcgga
gcaccagtggtcatctcccttatagcgggcattgccatcccagtcatcattgtgggcata
ccaatctacatgggccgaaaggtccatggtcgctgtaagaaaaacaatatctcaggaagc
aagcactacttgactgtggcgagtggggtgatgatgtccgtctttgtgtcgccggtcata
gcagctgtcactgtgggtgtgggtgtaccgctaatgctgacttatgtctatggggtggtc
cccatgtcactctgtaggaatgggtggtgtcgaccacagagtgaaccccctgaaacacac
aaaatccaactggaggacttagccagcttcagtgaccactggacgggtcagaacaaccca
acgctcagcgacaccagcgtccaggaagtcagagtcagtgtacaggaagtgggtgtcctc
ccaagtacgagcacctcgcccccagacctagatagctatgcgggattggacgaagctgca
aaacgccatgaatataccgagcaggacagcccatcagactgcgaggtggttattgtgcct
gacagcaagctcgacgacacacaagcgcttcctctgagggaaggaaccaatattgaggtt
cgtgtggaaattgagacccaccccagaggcgcccgccagtccagcctaagtagcatcctg
tctagcagaagcttgtcagcagagtctctgggacacccgcagtcccagtcccaagactac
ctgtgtgcctcagaactggaagaaagacgagaggggggaggagggaaaggagaggagcag
gagggaagagagaaaccaggaggggaggtggcaggaagagatgaagggacaggtttccca
gtatttgacatagatggtgtatga
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