Lates calcarifer (barramundi perch): 108895925
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Entry
108895925 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor 7-like 1-A
KO
K04490
transcription factor 7-like 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04310
Wnt signaling pathway
lcf04520
Adherens junction
lcf04916
Melanogenesis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108895925
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108895925
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
108895925
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108895925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108895925
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
108895925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108895925
NCBI-ProteinID:
XP_050928688
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All DBs
Position
LG9:complement(259425..274742)
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AA seq
584 aa
AA seq
DB search
MPQLNGGDGDDLGANDELIAFKDEGEQEEKRNVSAERDLDDVKSSLVNESESSSDSEADR
RPKPDPDLESRARHSQLFEEALRRQQDGGGLFQPSPYVGYPFFMIPDLGNLCSPYLTNGA
LTTSARTYLPFQWPLLDVPGRSAIRDSATPTHLSNNMPVVQHPHMTHLHPLLSYSPEAFS
PQRASPGFSPDTGMSRTPHAACYPVSPGGMAQIPHPLGWLPGQPMYPITGGFSPAALSSL
VSSGFSPRLVPXPQSSIPHPAIVPTGVKQEPGCSSQPGKSLPDAQQEKEDEKKPHIKKPL
NAFMLYMREERPKVVAQCKVKESATINQILGQRWHSLSKEEQAKYYELARKERLLHSKLY
PGWSARDNYGKKKKRKRAKSETLLEAPAAEDFSPQLKRPRAPPGPEETPPAHTLLTQPHP
QTAHTHARPHLTQPHTISHLTHTHLSQASPASSLDSPATPTTALASPAAPAPTHTEHTHS
SYGGHTSPYGEQLQPLSLTTKPHRTPHPLSRNTVTPGPSTPSSSSDTPTSSPLTASSRSS
PLPPPLLSQPFLVPPPTSAHQSAASSHGAFTQSQPFLLRRTNQL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagctaaacgggggagacggagacgacctgggagcaaacgatgaactgatcgct
tttaaagacgaaggggagcaggaggagaagagaaatgtgtccgctgaaagggacctggac
gacgtcaagtcatctctggtcaacgagtcagagagcagctcggactcggaggcagacaga
cgccccaagcccgatccagatctggagagcagggccaggcacagtcagctgtttgaagaa
gcgctgaggaggcagcaggacggcggaggtcttttccagccctcgccgtacgttggatat
cccttcttcatgatcccagacctcgggaacctctgtagtccctacctcaccaacggagcc
ctcacaacaagtgcccgcacgtacctgccgtttcaatggcctctgctcgacgtccccgga
agatcagccatcagagactctgctactcccactcacctgtctaacaacatgcctgtagtg
cagcacccccacatgacccacctccacccactgctgtcctacagcccagaggccttctcc
cctcagagggcctcacctggcttctccccagacacaggtatgtcgaggacacctcatgct
gcctgctaccccgtctctcctggaggcatggctcagatcccacaccctctcggatggctg
ccgggacagcccatgtatcccatcacgggggggttctcacctgctgctctgtcaagcctg
gtgtccagtggtttctctccacgtctggtgcccnacccccagtcgtccatccctcacccg
gccatcgtccccacaggagtgaagcaggagcctggatgcagcagccagcctgggaagtcg
ctgcctgacgctcagcaggagaaggaagacgagaagaagcctcacattaaaaaaccactt
aatgcttttatgttgtacatgagggaggagaggcccaaggtggtggctcagtgcaaggtg
aaagagagcgccaccatcaaccagatactgggacagagatggcactctctgtcgaaggag
gaacaggccaaatattacgaactggctcgtaaagagagactcctccactccaagctgtac
cccggctggtcagccagagacaactatggtaaaaagaagaagaggaagagggccaagagt
gaaactctgctcgaagctcctgcagcagaggatttctccccgcagctgaagagacctcgc
gccccccctggacctgaggagacgccccccgcacacactctgctcacgcagcctcaccca
cagactgcacacacacacgcccgcccccacctgacgcagccgcacaccatctcccacctg
acgcacacgcacctgtcgcaggccagccccgcctcctccctggactccccggccacaccc
accacggcgctggcgtcgcccgcagctccggccccgacgcacaccgagcacacacactcc
tcctacggcggacacacgtcgccctacggcgagcagctgcagccgctgtccctcaccacc
aagccccacaggaccccccaccccctgagccggaacaccgtcactccgggaccctccacg
ccgtcctcgtcctccgacacccccacctcctcacccctcacggcttcgtccaggagctca
cccctccctccccctctgctctctcagcctttcctcgtcccgcctcctacctccgctcac
caatcagcagcgagctctcacggtgcctttactcagtcgcagccgttcttactgagaaga
accaatcagctgtga
DBGET
integrated database retrieval system