Lates calcarifer (barramundi perch): 108897991
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Entry
108897991 CDS
T04895
Symbol
si:dkey-3h3.3
Name
(RefSeq) E3 ubiquitin-protein ligase DTX3L
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108897991 (si:dkey-3h3.3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108897991 (si:dkey-3h3.3)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108897991 (si:dkey-3h3.3)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108897991 (si:dkey-3h3.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DTC
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-rbx1
zf-RING_4
zf-C3HC4_3
zf-RING_10
DUF1272
zinc-ribbons_6
zf-RING_11
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
108897991
NCBI-ProteinID:
XP_018553376
UniProt:
A0A4W6E5H9
LinkDB
All DBs
Position
LG13:complement(30572..38030)
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AA seq
434 aa
AA seq
DB search
MAFITDLTVIIDEDGYKNPGGLIRILKSYSHEKKGSCYRVTAAFEEVEQLSDSLSEVKPN
SSSVIRGQICQQDEHASTHVKSVDVSGLVMAYIQQKCAKELGKIQGNDFVIETQPGLRTV
HNNPSNTVQVTFKPCHVSIYPVHADYVRQRFITFYQRTASDLQVTSVPVSPHDHKDLQRR
FPHLLFKPSHSKHETTATGPFLHIAKLKEFLLQNTQNAISGKSPLNKGPADTPSSRTSGP
QPTHSKNPEDESCPICMEPIVKTEKETLRCKHSFCRDCLKKAFDYKPVCPTCGELYGTLT
GTQPDGGRMDVTNSSSSLPGYEKYGTIIIQYYIPSGIQKGEHPNPGQPYEGVSRTAYLPD
SSEGKRVLKLLRRAFDQRLIFTVGRSTTSGRNNTVTWNDIHHKTSTHGGPTHYGYPDPDY
LSRVRDELKVKGIE
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttatcacagacctcactgtcattattgatgaagatggttacaaaaaccctgga
ggattaatcaggattctgaagtcttacagtcatgagaaaaaaggctcctgctacagggtg
acagcagcctttgaggaagtggagcagctttcagacagcctgtcagaagtgaagcctaat
tccagttctgtcatacgtggacaaatttgtcagcaagatgaacatgcttcaactcatgtc
aaatctgtggatgtatctgggcttgttatggcctacatccagcaaaaatgtgcaaaagaa
cttggaaaaattcaagggaatgattttgtcattgaaacacagcctggcctcaggacagtc
cacaataaccccagcaacacagtgcaggtgacttttaaaccatgccatgtctccatatac
cctgttcatgcagactatgtcagacagcgattcatcacattctaccagagaactgcctcc
gacctgcaggtcacatcggtccctgtgagtccacatgaccacaaagacttgcagaggaga
tttccacatctcctttttaaacccagccacagtaaacatgaaacaacagcgactggacct
tttctgcacatcgctaaattgaaagagttccttctacaaaacacacaaaatgcaatttca
ggcaagagtccgttgaacaaaggtccagcagacactcccagcagcagaacctctggtcct
caacctacacacagcaaaaatcctgaagatgaatcatgtccaatttgtatggaaccaata
gtaaaaacagagaaagagaccctgcggtgcaagcactccttctgcagagactgtctgaaa
aaagcttttgactacaaacctgtatgtccaacatgtggagagttgtatggcactttgaca
gggacacaacctgatggaggcagaatggatgtcaccaacagctcttcatctttgcctgga
tatgagaagtatggaacaataatcatccaatattacattccaagtggcatccaaaagggg
gagcatcctaaccctggtcagccatatgaaggtgtgtcccgtacagcctatctcccagac
tcgtcagagggcaagagggtcctgaaactgttgagacgggcctttgatcagagactcatc
ttcactgttggtcgctccaccactagtggtaggaacaatacagtgacatggaatgatatt
caccacaaaacctcaacgcatggaggaccaactcactatggatacccagatcctgattac
ctcagccgagttcgagatgaactgaaagtcaaaggaattgaataa
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