Lates calcarifer (barramundi perch): 108898731
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Entry
108898731 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-3-like
KO
K06493
integrin beta 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03266
Virion - Herpesvirus
lcf04081
Hormone signaling
lcf04145
Phagosome
lcf04148
Efferocytosis
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04517
IgSF CAM signaling
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
108898731
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
108898731
04512 ECM-receptor interaction
108898731
04517 IgSF CAM signaling
108898731
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108898731
04148 Efferocytosis
108898731
09144 Cellular community - eukaryotes
04510 Focal adhesion
108898731
09142 Cell motility
04820 Cytoskeleton in muscle cells
108898731
04810 Regulation of actin cytoskeleton
108898731
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108898731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108898731
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108898731
04515 Cell adhesion molecules [BR:
lcf04515
]
108898731
04090 CD molecules [BR:
lcf04090
]
108898731
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
108898731
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108898731
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin beta subunits
108898731
CD molecules [BR:
lcf04090
]
Proteins
108898731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
PSI_integrin
I-EGF_1
EGF_integrin
EGF_2
EGF_Teneurin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
108898731
NCBI-ProteinID:
XP_018554254
UniProt:
A0AAJ7VHR1
LinkDB
All DBs
Position
LG23:10447036..10462492
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AA seq
819 aa
AA seq
DB search
MSFFSLVLLLVLATHLIGRLFPHRARTRMGALPAQGLLWMCVLIFTGVTQVCASNVCTSR
GASTCKQCLAVHPSCAWCFQEDFGQGVATSSRCDLKNTLVEAGCAPSAVESPTSKLQVIE
DRPLSNKAAGATQDVTQIKPQKLHITLRPDDAKVFTVKVRQVEDYPVDLYYLMDLSYSMN
DDLFRLRTLGKGLAEAMNRTTSNLRMGFGAFVDKPLSPYMYISPKEAVKNPCYSINNTCL
PQFGYKHVLSLTEEVGRFTEEVKKQMVSRNRDAPEGGFDAIIQAAVCKEQIGWRPGASHL
LIFTSDAKTHVALDGRLAGIVQPNDGQCHLNSDNIYSMSTTMDYPSLALITEKMSENNIN
LIFAVTNPVVPLYQNYSELIPGTTVGTLSNDSGNVIQLILKAYAKIRSKVELELQGVPEE
LSLSFNATCLNGEVIPGLKSCSGLKIGDTVSFTVEARARGCPKQKKKTFIIKPVGFKDSL
SITVTFECDCKCQAKAQPNSPKCNQGNGTYECGICLCHPGRLGPHCECAEGDYNPTEQDR
CSSGGPHSAICSGRGDCVCGQCVCHSSDFGKVWGKLCECDDFNCLRYKGELCSGHGVCNC
GFCQCAPDWKGENCNCSRRTDTCMSTXGLLCSGRGQCVCGACECTQPGAYGATCDKCPTC
PDACTMKKECVECKHFKRGKLFEDNTCSRICKDEIELVDELVLHDTNAVNCTYKDEDDCV
ERFQYYEDASGKSILFVVKEPDCPKGPDILVVLLSVAGAILFLGLAALLIWKLLVTIHDR
REFAKFEEERARAKWDTGHNPLYKGATSTFTNITYRGKD
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttttcccttgttctcctgcttgtactcgcaacacatctcattggcaggctc
tttcctcacagagcccgcaccaggatgggtgctctcccggcgcaggggctattgtggatg
tgtgttttgatctttactggagtaacacaagtttgcgcttcaaacgtctgcacctccaga
ggagccagcacatgcaagcagtgtctggctgtgcaccccagctgtgcgtggtgcttccag
gaggactttggccagggagttgccacttcctcccgctgtgacctgaagaataccctggtg
gaagctggctgcgctccgtcagcagtggagtctccaacaagcaaactgcaggtgatcgag
gaccggcccctcagcaacaaagcggcaggggccacgcaggatgtcacgcagatcaagccc
cagaaactccacatcaccctgaggccagatgatgccaaggtcttcacggtgaaggtgcgt
caggtggaggactaccccgtggatctctactacctcatggacctctcctactccatgaat
gacgacctcttccgtctgaggacactgggcaaaggcctggctgaggccatgaaccgcacc
accagcaacctccgcatgggctttggggcttttgtggacaagccgctctcgccttacatg
tacatctcccccaaagaggctgtgaagaacccctgctacagcattaacaacacctgtctg
ccccagtttggctacaaacacgttctgtctctgacggaggaagtgggccgcttcaccgaa
gaagtgaagaagcagatggtgtccaggaaccgcgatgccccggagggaggctttgatgcc
atcatccaggctgctgtgtgcaaggagcagatcggctggcgtcccggcgcttcccacctc
ctgatcttcacctcggatgctaagactcacgtggctctggatggtcgcctggcaggaatc
gtgcaacccaacgatgggcagtgccacctcaactctgacaatatttacagcatgtctacc
accatggattacccatctctcgctctgatcacagagaagatgtcagagaacaatatcaac
ctcatctttgctgtcaccaaccctgtggttcctctgtaccagaactacagtgagctgatt
cctggcaccacagtaggaacactgtccaacgactcgggcaacgttattcagctcatcctg
aaggcctacgctaaaatccgttccaaggtggagctggagcttcaaggcgtcccagaggag
ctgtccctgtcctttaacgccacctgtctgaatggagaagtcatccctggcctcaagtcc
tgctctgggctcaaaataggagatacggtctctttcactgttgaggccagagctcgtggt
tgccccaaacagaagaagaaaaccttcatcatcaagcctgtgggcttcaaggactccctc
tccatcaccgtcaccttcgagtgcgactgcaagtgccaggccaaagcccagcccaacagc
cccaagtgtaaccaaggcaacggcacttacgagtgcggcatctgcctgtgccacccgggt
cgcctggggccgcactgtgagtgcgcagagggcgactataatcccacagagcaagaccgc
tgcagctccggagggccccactccgccatctgcagcggccgcggagactgtgtgtgcggc
cagtgtgtgtgtcacagcagtgactttgggaaagtctggggcaagctgtgcgagtgcgac
gacttcaactgcctccgctacaagggggaactctgctcaggccacggcgtctgtaactgc
ggcttctgtcagtgtgcaccggactggaagggtgagaactgtaactgctccaggcgtact
gacacctgtatgtcaaccntgggtctgctgtgtagcggtagaggccagtgtgtgtgtggg
gcctgcgagtgcacccagcccggtgcgtatggggccacatgtgacaaatgccccacctgc
cctgacgcctgtaccatgaagaaagagtgtgtggagtgtaagcacttcaagaggggcaaa
ctgtttgaggacaacacctgctctcgaatctgcaaggatgagatcgagcttgtggatgaa
ttagtgctccatgatacgaatgctgtgaactgcacgtacaaagatgaggatgattgcgtg
gagcgtttccagtactatgaagatgccagtggcaagtccatcttgtttgtcgtcaaagag
ccagactgccccaagggtccagacattttggtggtgcttctgtcagtcgcaggagccatc
ttgttcctgggcctggcggctctgctcatctggaaactgctggtcactatccatgacaga
cgggagtttgccaaatttgaggaagaacgtgcgcgtgccaagtgggacacgggacacaat
cctctctacaaaggagccacctcgaccttcacaaacatcacatacagaggaaaagactga
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