Lates calcarifer (barramundi perch): 108899586
Help
Entry
108899586 CDS
T04895
Symbol
phf1
Name
(RefSeq) PHD finger protein 1 isoform X1
KO
K11467
PHD finger protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108899586 (phf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108899586 (phf1)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108899586 (phf1)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
108899586 (phf1)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108899586 (phf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
PHD
Mtf2_C
PHD_ash2p_like
PHD_2
Chromo
Zip
DUF4537
ASH2L-like_WH
Motif
Other DBs
NCBI-GeneID:
108899586
NCBI-ProteinID:
XP_018555604
UniProt:
A0AAJ7VIG6
LinkDB
All DBs
Position
LG15:5022812..5039698
Genome browser
AA seq
598 aa
AA seq
DB search
MGGVSEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFAAGVEE
VCCICDAPPLKEPLINCLKCRHGYHPECHTPTIEPEADSDSWICRQCVFAVATKRGGALK
RGRFARLMQFMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYQFQCSVCTKGPETIQRLPMTWVDLAHLVLYHLSLCCKRKYFD
FDHEILSFTNENWDSLLLGALSDTPKQDRCHNLLNALNSHKDRFVSGKEIKKKKCLFGLQ
VRAPPPLTSDSSPLITDPPINITHRRSPLSLPCQRRVGGPESRKSKRRIIETQVSASVSN
SGEGACPPPVAANPIELLPCCHGYMGGASLYNSRKSEEELNLSSPPKRMYALYHTTYNGN
TALSRSLHHYNSMEDTCRLPPPCFPYPLNSNGSHHHHHLHQHHHTHQHNHQHNHQHSHQH
NHQHNHQHNHQHNHQHQPGQKQLEPLILRDLPPYQASVGGGGGIGGGGGGGCGGGGGVGG
GGGGGGGGGGGGGIGVGGGGGTVARSWGGGEAVRILARRVTPDGKVQYLVEWENVSLY
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggggggagtaagtgaaggagatgatgtgttggctcgatggagtgatggactactgtac
ctcggcaatgtgaaaagagtagatggagtcaagcaatgctgtctggtgagatttgaggac
aactcggagttctgggtactgagaaaggacattcactcgttcgctgctggagtggaagaa
gtttgctgtatttgtgacgctccgcctcttaaagaacccctcataaattgtcttaaatgt
cgccacggttatcatccagagtgccacacgccaaccatcgaaccggaagctgacagcgat
tcgtggatatgtcggcaatgtgtctttgcagtcgcaaccaagagaggtggggccctcaaa
cggggacgcttcgcccggctcatgcagtttatgaaactccggctcccttaccagctgtca
tctttagactgggacccgcagcatctgaccaatcagcaacagtgttactgctactgtgcc
ggacctggagagtggaacctaaagatgttacagtgtggaagctgtggtcagtggttccac
gaggcctgcacacagtgtctaaccaagccattgctgtatggggacaggttttatcagttc
cagtgctctgtatgtacaaaaggaccagagaccatccaaagactacccatgacctgggtg
gatttggctcatttagtgctctaccatctctcgctgtgctgcaagaggaaatactttgat
tttgaccatgaaatcctgtccttcaccaatgagaattgggactcgttgctcctaggcgcg
ctttctgacacgccgaagcaggaccgctgtcacaatctcctcaacgctctgaactcccac
aaggacaggttcgtctcggggaaggagatcaagaagaagaagtgtctatttgggcttcag
gtccgagccccacctccgctgacgtctgattcgtctcccctcatcaccgacccacctatc
aacatcacacaccggagaagcccgctgtcactaccctgccagaggagagtggggggaccc
gagtcacgtaaatcaaagcgtcgcatcatagagacacaggtcagtgcctctgtctccaac
tcaggggagggggcttgtccacctccagttgctgccaaccccattgaactactgccatgt
tgccatggttacatgggaggggccagcctgtacaactccaggaagtcagaggaggagctt
aacttgagctctcctcccaaacggatgtacgccctgtaccacaccacttacaatggaaac
actgcgctctccaggagtctccatcactacaacagcatggaggacacctgcaggttacca
ccaccgtgcttcccataccccctcaactccaatggcagccatcaccaccaccacctccac
cagcaccatcacacccaccaacacaaccaccaacacaatcaccaacacagtcaccaacac
aaccaccaacacaaccaccaacacaatcaccaacacaaccaccaacaccagccggggcag
aagcagctggaaccgctcatcctacgtgatctgcccccttaccaggccagcgtgggcgga
gggggtggcataggtggaggaggaggaggaggatgcggcggagggggaggagttggcggc
ggtggaggaggaggaggaggaggtggaggaggagggggtataggagttggaggaggcggc
gggacagtggccaggagctggggcggaggggaggcggtgaggatcttggcgagacgcgtc
acaccagacgggaaggttcagtacctggtggagtgggagaacgtgagtttgtactga
DBGET
integrated database retrieval system
