Lates calcarifer (barramundi perch): 108900132
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Entry
108900132 CDS
T04895
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108900132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108900132
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108900132
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108900132
NCBI-ProteinID:
XP_018556506
UniProt:
A0A4W6DFN7
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Position
LG5:26047910..26053364
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AA seq
432 aa
AA seq
DB search
MKDTPLANCERDFLLKAIEEKKRLDGRQTYDYRKIKITFGTDYGCCFVDLGRTRVMAQVS
CELVAPKENRPNEGIMFFNIELSPMASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPDVAIQGDEVTVFSPEER
DPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVMRCSKIASVKVSEITELIGKALENDKKARKAGGRCGFAESIPQERITALKMEE
SPVEMMDVTERANDIVQKAEAPPQTVPSPVVPVPGVGQVGQGLQNTWGLEDDDEEEEEEE
ENGNRGEEQEGKASKMEKYEKEESRGGDVVEISDSEEEEVVILHPETSDKAPVNTGSRSS
SHQKGAAKSKKK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatacacctcttgccaactgtgagcgggatttcctgcttaaagccatcgaggag
aaaaagcggctggatggacggcagacctatgactacagaaagataaagatcacgtttggc
acggactatggatgctgctttgtcgacctggggagaaccagggtcatggctcaggtgtcc
tgtgagctggtggctcctaaagagaatcgaccaaacgagggaatcatgttctttaacatc
gaactgtcgcccatggcctcaccagcattcgaacagggcagacagtctgagttatcagtg
aagctaaacagacagctggagagatgcctgaggaactccaagtgcattgatacagagtcc
ctgtgtgtggtgtctggagaaaaggtgtggcagatcagagtggatgtccacatgttgaat
catgatgggaacctgatggatgctgccagcatcgccgccatcactgctctgtgccacttc
agacgccctgacgtcgccatccagggagatgaagtcacagtgttcagtccagaggagaga
gaccctattcctctaagtatctaccacatgcccatcagtgtcagcttctccttcttccag
caaggaacatatctgctagtggacccctgtgagcgggaggagcgggtgatggatggcttg
ctgatgattgctatgaacaaacacagagaaatctgttccatccagtccagcgggggcatc
atgctgcttaaggaccaggtcatgagatgcagtaagattgccagtgtcaaagtgtctgaa
atcacagaactcatcggcaaagccctggaaaatgacaagaaagccaggaaggcaggcggt
aggtgtggttttgcagagtctattcctcaggagcgaatcacagctctgaaaatggaggag
tctccagtggagatgatggatgtaacagaaagagccaatgacattgtccagaaagcagag
gccccacctcagacggtaccatccccagtggtgcctgttccaggtgtgggtcaggtgggt
caggggctgcaaaacacctggggcctggaggatgatgacgaagaggaagaagaggaggag
gaaaatggcaacagaggtgaagaacaggaggggaaagcatcaaagatggaaaagtatgaa
aaggaagagagcagaggaggagatgtggttgaaatatcagacagtgaagaggaggaagtg
gtcatacttcatccagagacatcagacaaagctcctgtaaatacaggatccagatccagt
tcacaccagaagggggcagcaaaatccaagaaaaaatga
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