KEGG   Lates calcarifer (barramundi perch): 108900132
Entry
108900132         CDS       T04895                                 
Name
(RefSeq) exosome complex component RRP45
  KO
K03678  exosome complex component RRP45
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108900132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108900132
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     108900132
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 108900132
NCBI-ProteinID: XP_018556506
UniProt: A0A4W6DFN7
LinkDB
Position
LG5:26047910..26053364
AA seq 432 aa
MKDTPLANCERDFLLKAIEEKKRLDGRQTYDYRKIKITFGTDYGCCFVDLGRTRVMAQVS
CELVAPKENRPNEGIMFFNIELSPMASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPDVAIQGDEVTVFSPEER
DPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVMRCSKIASVKVSEITELIGKALENDKKARKAGGRCGFAESIPQERITALKMEE
SPVEMMDVTERANDIVQKAEAPPQTVPSPVVPVPGVGQVGQGLQNTWGLEDDDEEEEEEE
ENGNRGEEQEGKASKMEKYEKEESRGGDVVEISDSEEEEVVILHPETSDKAPVNTGSRSS
SHQKGAAKSKKK
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgaaggatacacctcttgccaactgtgagcgggatttcctgcttaaagccatcgaggag
aaaaagcggctggatggacggcagacctatgactacagaaagataaagatcacgtttggc
acggactatggatgctgctttgtcgacctggggagaaccagggtcatggctcaggtgtcc
tgtgagctggtggctcctaaagagaatcgaccaaacgagggaatcatgttctttaacatc
gaactgtcgcccatggcctcaccagcattcgaacagggcagacagtctgagttatcagtg
aagctaaacagacagctggagagatgcctgaggaactccaagtgcattgatacagagtcc
ctgtgtgtggtgtctggagaaaaggtgtggcagatcagagtggatgtccacatgttgaat
catgatgggaacctgatggatgctgccagcatcgccgccatcactgctctgtgccacttc
agacgccctgacgtcgccatccagggagatgaagtcacagtgttcagtccagaggagaga
gaccctattcctctaagtatctaccacatgcccatcagtgtcagcttctccttcttccag
caaggaacatatctgctagtggacccctgtgagcgggaggagcgggtgatggatggcttg
ctgatgattgctatgaacaaacacagagaaatctgttccatccagtccagcgggggcatc
atgctgcttaaggaccaggtcatgagatgcagtaagattgccagtgtcaaagtgtctgaa
atcacagaactcatcggcaaagccctggaaaatgacaagaaagccaggaaggcaggcggt
aggtgtggttttgcagagtctattcctcaggagcgaatcacagctctgaaaatggaggag
tctccagtggagatgatggatgtaacagaaagagccaatgacattgtccagaaagcagag
gccccacctcagacggtaccatccccagtggtgcctgttccaggtgtgggtcaggtgggt
caggggctgcaaaacacctggggcctggaggatgatgacgaagaggaagaagaggaggag
gaaaatggcaacagaggtgaagaacaggaggggaaagcatcaaagatggaaaagtatgaa
aaggaagagagcagaggaggagatgtggttgaaatatcagacagtgaagaggaggaagtg
gtcatacttcatccagagacatcagacaaagctcctgtaaatacaggatccagatccagt
tcacaccagaagggggcagcaaaatccaagaaaaaatga

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