Lates calcarifer (barramundi perch): 108900287
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Entry
108900287 CDS
T04895
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108900287
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108900287
09142 Cell motility
04820 Cytoskeleton in muscle cells
108900287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108900287
Proteoglycans [BR:
lcf00535
]
Extracellular matrix (ECM) proteoglycans
Others
108900287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
108900287
NCBI-ProteinID:
XP_018556788
UniProt:
A0AAJ7QIK4
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Position
LG3:complement(3798596..3824913)
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AA seq
888 aa
AA seq
DB search
MAFPSSGLSRKQPWHLSKSVYSPVCMALLSLLLAPALGQLDLNRLDGDTVCPPMRSGQDD
LPGFDLITQFQLDVIPLKGVRKVDGSTSLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
ATFRMIKNTVNKVWNVWQIVDEDGNKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDKKPIKGKGPINTEGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMYANAEPDKSVQGPPGAPGPEGPRGAPGENGRDGR
DGLPGSPGSPGAPGSKGEQGEIGLPGQRGLPGLPGVAGSPGPMGPRGPVGERGLPGFPGP
QGPPGPASEGPPGPPGKPGTPGDEGNIGPEGPPGPRGVSGTPGPPGPPGPPGPVGPPGAS
NEGSGEPCPAACPAGPQGMAGLPGMKGHKGVPGENGKDGIPGEKGETGAAGPQGPPGRMG
DDGQRGPIGFPGAEGEKGDRGPPGFNGVPGPTGPPGAPGVEGIRGRQGLPGPKGDDGDVG
PQGEQGPQGEKGDVGEPGADGLDGLPGTDGAKGEPGTPGAVGVRGIVGIPGLPGKQGVVG
PPGAKGDTGAEGPIGPVGLPGKTGEPGLDGEDGKPGDKGATGETGKQGPVGPAGPPGIQG
DKGDKGNTGAKGMKGHTGHKGDQGPMGPMGPQGSQGDPGMAGDPGVKGDQGPPGVPGVKG
QRGEKGQRGAVGIDGRPGQPGHEGLAGPMGARGLEGEPGLPGAPGPRGLPGPKVSDEKLR
EMCSAVVEEQLAEFKKELLKRPAAIGAPGTPGPAGPPGPPGPAGAAGTAGAPGPMGPKGP
PGFFGLPGAPGKKGDAGEKGDKGDRGEDGVGTKGSPGAPGAPGKAGFL
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggccttccctagctctggtttgtcgagaaagcaaccatggcatctatcaaagtcagtg
tactcccctgtctgtatggctctactgtccctcctcctcgctccagcacttggacaacta
gacctcaaccgactggatggtgataccgtctgcccaccaatgaggagcggacaagatgac
cttccaggttttgatctgatcacccagttccagctggacgtgatccctctgaaaggtgtg
aggaaggtggatggctccacttccctccaggtggcctaccgcctcgacagggaggccaac
ttccaaattccaaccatgctaaattttccccgtggcttcccagacgagtactccttcatg
gcgaccttccgcatgatcaagaacacggtgaacaaagtgtggaatgtctggcaaatagtg
gacgaggacggcaacaaacaagccggactgaggctgaatggcgaccagcaggctctggaa
tacttcctgatgggcgccgatggcaacttgcagaccgtcaccttccctggcctctctgtg
ctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgcgaccaggtcactctg
tacgtggactgccagcccgtggataagaaacccatcaagggcaaaggccccatcaacaca
gagggagacactctcattggcaggctggatgctgatcctgacgcctccgtggtgtttgag
cttcagtggatgttgattcactgcgacccaaagagagcccagagagagagctgcaatgag
ctgcctgccaccgagatgtatgccaatgctgagcctgacaaatcagtccaaggcccccca
ggagcccctggccccgagggcccccgaggggccccaggagaaaatggcagagatggaaga
gatggtcttccagggtcccctggcagtcctggggctcctggcagcaaaggggagcagggg
gagatcggtcttcctggacagagaggcctgcctggtcttccaggagttgctggttctcct
ggcccaatgggtcccagagggcctgtaggagagagaggtcttcctggctttcctggacct
caaggtcctcctggcccagcaagtgaaggacctcctggaccaccagggaaaccaggaacc
ccaggagatgaaggaaacatcgggcctgagggtccaccaggacccagaggggtatctggc
accccaggaccacctggccctcctggtccaccggggcctgtgggacctcctggtgccagc
aatgagggaagtggggaaccttgtcctgctgcctgccctgctggaccacagggaatggct
gggctaccagggatgaagggacacaaaggtgtgcctggtgagaatggaaaagatggaata
cctggagagaagggagagactggagcagcgggtcctcaggggccaccaggtcgcatggga
gatgatggtcaaagagggcccattggattccctggagctgagggagagaagggagacaga
ggtcctcctggtttcaatggcgtcccaggacccaccggcccgcctggagctcctggtgtg
gagggaatccgtggacgtcaaggtttgccagggccaaagggtgacgatggagatgtggga
cctcaaggagagcagggacctcaaggggaaaaaggggatgttggagagcctggcgcagat
ggcttggatggacttcctggaactgatggtgctaagggagagcctggtactcctggagct
gttggtgtcagggggattgtgggtattccaggcctgccagggaagcagggagtagttgga
ccccctggtgcaaagggtgatactggtgctgagggacccatcgggcctgttggacttcct
ggaaagactggtgagcctggattagatggagaagacggaaaaccaggagacaaaggagca
actggtgaaacaggaaaacaaggtccagtggggcctgcaggccctccaggcatccagggt
gacaaaggagataaaggcaacaccggtgccaaaggaatgaagggtcatactggacacaaa
ggtgatcagggacctatgggaccaatgggaccacaaggaagtcagggggacccaggaatg
gcaggagaccccggcgtgaagggagaccagggtcctcccggtgttcctggagtcaaagga
cagcgtggagagaagggccaaagaggagcagtgggaattgatggcagaccaggtcagcca
ggacatgagggtttggccggtccaatgggagctcgagggctggagggagaaccgggcctt
cctggagcaccaggtcccagaggtctacctggcccaaaagtgagtgacgagaagcttcgg
gaaatgtgctcagctgttgtagaagagcaattagcagagtttaagaaagagcttctgaag
aggccagcagccattggtgcccctggtacccctggacctgcaggacctcctggcccccct
ggaccagctggagcagcaggaacagcaggagctccagggccaatgggtcccaaaggccct
ccaggcttctttggacttccaggcgcaccaggcaagaaaggtgatgctggggagaaggga
gacaagggagacaggggagaggatggcgtaggaaccaaaggaagcccaggcgcacctggt
gcaccaggtaaggctggattcttgtga
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