Lates calcarifer (barramundi perch): 108900581
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Entry
108900581 CDS
T04895
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X5
KO
K04834
voltage-gated sodium channel type II alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108900581 (scn1lab)
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108900581 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
IQ
New_glue
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
108900581
NCBI-ProteinID:
XP_018557220
UniProt:
A0AAJ7QIQ5
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All DBs
Position
LG7_2:11255843..11293831
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AA seq
2020 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDSDDENGPKPNSDLEAGK
SLPFIYGDIPPHLVSTPLEDLDPFYSNQKTFIVLNRGKAIFRFNATPALYLLSPFNPLRR
IAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFSFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRLPVASNATDSSNITADDNSL
MDINITFVQNTTTNSFNWTEYISDENNYYYLPGRRDALLCGNGSGAGLCPEGFLCIKAGR
NPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVN
LILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGG
PTSESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGGRKFHKSESEDSIKRSSFRFSID
ANRLSYEKRCSSPNQSLLSIRGSLLSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFE
ESDSRRGSLFLPRRLERRCSAVSQTSLGAPRIMLPANGKMHCTVDCNGVVSLVGGTSVTT
SPVGLLLPEGTTTDTELKKRRSGFHQPSMDYLDEPGGRQRAMSVASILTNTMEELEESRQ
KCPPCWYRFANTCLIWDCCPAWLKIKEVVNMVVMDPFVDLAITICIVLNTLFMAMEHYPM
TKEFNTVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANV
EGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKSYKECVCKISDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVF
MMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKATVRQ
FLQSLCFGGGGKGSGLAEESKPLDELHSNGKGNCISNHTSVEITKDPSGVYMTEGNGRPG
GGLVVGVGAGGDTTVKYPIEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSD
VEGSKEKLDAEPQPLSSSEGSTVDIRPPGDGVDSVELEPEESLDPEACFTEGCVRRFQCC
QVNEEGSNYKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKTML
EYADKVFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAI
KSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGK
YYYCVNTTTDEIFPISIVNNKSDCLNLVNDSARWKNVKINFDNVGAGYLALLQVATFKGW
MDIMYAAVDSRDLEDQPKYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDCITKQAFDIVIMILICLN
MVTMMVETDDQTPEMDKILYWINLVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVIL
SIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPIL
NKREPDCDSQMEHPGNSYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATE
ESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIQLISMDL
PMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQ
EDMSAIVIQRAFRRYMIRLAMKKASALYKEQLKEGIRDPDKDVMVISKFNENSTSDKTDM
TPSTASPPSYNSVTKSDKDKYEKENREKENKVKDLKDRKK
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggccgagcgc
cgcagcgacagcgatgacgaaaatgggccaaagcccaacagtgacctggaggcagggaaa
tctctccccttcatttatggggacatccctccccacctggtgtccacccctctggaggac
ttggaccccttctacagcaatcagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacctcttaagccccttcaaccctctaaggagg
atagctattagagttttagtacactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtcccttataaaaatcctggccaggggcttctgt
gtggggaagttctctttcctccgagacccatggaactggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctacgagccctgaaaactatatcagtcatcccaggcttgaagaccattgtcggcgca
ctgatccagtcggtcaaaaagctgtcggacgtgatgatcctcactgtgttttgcctgagt
gtgttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgt
ctgccagttgccagcaatgccaccgacagcagcaacatcaccgccgacgacaacagcctg
atggacatcaacatcacttttgtgcagaacactacaactaactccttcaactggacagag
tacatcagcgatgagaataattactattacctccctggccgtagggatgctctgctctgt
gggaatggcagtggcgctgggctgtgtccagagggctttttatgtatcaaagcaggtcgt
aatccagattatggttacaccagctttgacaccttcagctgggcctttctctctttgttc
cggctcatgacccaggactactgggaaaacctctatcagcagactttgcgtgctgcaggg
aaaccctacatgatctttttcgtgctggtgatctttctgggctccttttacttggtcaac
ttgatcttggccgtggtggccatggcttacgacgagcagaaccaggcgaccatcgaggag
gctcagcagaaagaggaggagttccaggccatgctggagcagctgaagagacagcaggag
gaagcacaggttgccgcagcagcagccacggagagcggagagtacagcgggagagggggc
cccacctccgagtcctcctcagggacgtctaagctcagctccaaaagtgccaaggagcgg
cgcaacaggcggaagaagaggaaacagagggaggaggaggaggagagggggggccgcaag
ttccacaagtctgagtctgaggacagcatcaaaagatccagtttccgcttctctattgat
gccaatcggctctcttatgagaagagatgttcctcacccaaccagtctctcctcagtatc
cgtggatccctcctctcacctcggaggaacagccgtgccagcctattcagcttccgtggc
agagcacgcgacatgggctctgagaacgacttcgccgacgatgagcatagcaccttcgag
gagagcgacagtcgccggggctccctgttcttgccacgccgtctcgagcgccgctgcagc
gctgtcagccaaacaagcctcggggcgccgcggatcatgctgcctgccaacggcaagatg
cactgcactgtagactgcaatggtgtggtgtcgctggtcggtggaacttctgtaacaacc
tcccctgtaggtctcctgctgcctgaggggacaactacagatactgagctgaagaaacgc
cggtcaggttttcaccaaccatccatggattatttagatgaaccaggggggcggcagaga
gccatgagtgtggccagtatcctcaccaacaccatggaagagctcgaagagtcgagacag
aagtgccccccctgctggtatagatttgccaacacctgtctgatctgggattgttgtcca
gcatggctgaaaatcaaggaagtcgtcaacatggtggtcatggacccatttgtggatctg
gctatcacaatttgcatcgtcctcaacacccttttcatggccatggagcattaccccatg
actaaagaattcaatactgtcctctcagttggaaacctggtgttcacaggcatcttcaca
gcagagatgtgtttcaagatcatcgccctggatccatactactacttccaggagggctgg
aacatttttgacggcatcattgttagtctcagtctgatggagcttggattggccaacgta
gaaggcctgtctgtgctcaggtccttcagattgctgagggtcttcaaactggccaagtca
tggcctactttgaacatgctgatcaagatcatcggtaactcagtgggggctctggggaac
ttgactcttgtgctggccatcattgtcttcatcttcgctgtggtgggcatgcagctgttt
ggcaagagctacaaggagtgtgtgtgtaagatttctgatgactgtcagctgccccgttgg
cacatgcacgatttcttccactccttcctcatcgtgttccgggtgctgtgcggagagtgg
atcgagaccatgtgggactgcatggaggtggcaggacagacgatgtgcctgatagtcttc
atgatggtcatggtcattggcaacctggtggttctaaacctgttcctggctctcctcctg
agttcattcagcgctgacaacctggcagcaaccgatgatgacagcgagatgaacaacctg
cagattgctgtgggccggatccagcggggcatcgcattcgtcaaagccaccgttcggcag
ttcctccagagcctctgctttggcgggggcggtaagggatccggtctggctgaggagagc
aaacccttggacgaactgcacagcaatggcaagggcaactgtatctccaatcacacttca
gtggagatcaccaaagaccctagtggggtgtacatgacggagggcaatggacggccagga
ggagggctggtggttggggtcggggctggcggggacactacagtgaagtaccccatagag
gaatgtgactacatgtcatttattcataaccccagcctgacagtcacggtgcccattgct
gtgggcgagtcggactttgagaaccttaacacagaagatttcagcagtgattcatcagat
gtagagggcagcaaagagaagcttgatgcagagccccagcctctgagctcatcggagggg
agcacagttgatattcgccccccaggagatggggttgactcagtggagctcgagccagag
gagtcactggacccagaggcctgcttcacagagggctgtgtgcgcaggttccagtgctgc
caagtcaatgaggagggcagcaattataagagctggtggacactcaggaagacctgcttt
atcatagtagagcacaactggtttgaatccttcatcatattcatgatcctgctcagcagt
ggagcactggcattcgaggacatttacattgagcagcggaggaccatcaaaacaatgctg
gagtacgcagacaaggtcttcacttatgtcttcattctggaaatgctgttgaagtgggtg
gcatacggcttcgtcaagtactttacaaacgcctggtgctggctcgacttcctcattgta
gatgtgtccctggtcagccttgtagccaatgctctgggctactctgagcttagtgctatc
aaatctctgaggacactgcgagccctccggcccctgagggctctgtctcggtttgagggc
atgagggttgtggtgaacgcgctgctgggggccatcccctccatcatgaacgtgctgttg
gtctgcctcatcttctggctcatcttcagcatcatgggcgtcaacctgtttgcagggaag
tactattactgtgtcaacaccaccacagacgagatcttccccatcagcatcgtcaacaac
aagagtgactgcctgaacttggtcaacgacagcgcccgctggaagaatgtcaaaatcaac
tttgacaacgtcggggccggctatctggctctgctgcaagtggcaacatttaagggctgg
atggacatcatgtatgcagccgtggattctcgagatttggaagaccagccgaaatatgag
gtgaacctgtacatgtacctctactttgtcatcttcatcatctttggctccttcttcacc
ctcaacctgttcattggtgtcatcatcgacaacttcaaccagcagaagaaaaagtttgga
ggtcaggacatcttcatgacagaagaacagaagaaatactacaatgccatgaagaagctg
ggttccaagaaaccacaaaaacctatacctcggccaacaaatgcatttcaaggctgcgtg
tttgactgcatcacaaagcaggcttttgacatcgtgatcatgatcctcatctgccttaac
atggtgaccatgatggtggagacagacgaccagacgccagagatggacaaaatcctttac
tggatcaacctggtcttcattgtgctcttcactggggagtgtgtgctcaagatgatctcc
ctgcgtcactattacttcaccattggctggaatatatttgactttgtggtggtgatcctt
tccatcgtaggtatgtttctatctgaagttatcgagaaatactttgtgtccccaaccctg
ttccgagtgatccgtctggccaggataggccgcatcctccgtcttatcaaaggtgccaag
ggcatccggacgcttctctttgccttgatgatgtcacttcctgcccttttcaacattggc
ctcctcctctttctggtcatgttcatatacgccatctttggcatgtccaactttgcctac
gtcaaacgtgaggcaggaatcgatgacatgttcaattttgagacctttgggaacagtatg
atctgtttgtttcagattaccacctcagctgggtgggacggcctgctggcacccatactg
aacaagagggagcctgactgtgacagccagatggagcacccaggcaactcctacaaaggc
aactgtggcaacccgtcagtgggcatcttcttctttgtcagctacatcatcatctgcttc
ctcattgtggtcaacatgtacattgccgttatcctggagaacttcagcgtggctactgag
gagagcgctgagccactgagtgaggatgactttgagatgttctatgaagtgtgggagcgt
tttgatccagacgccactcagttcatggagtacagcaagctttctgactttgcagatgct
ctagacccaccgctgcggatgcccaagcctaatatgatccagctcatctccatggacctg
cccatggtgagtggcgagcgcatccactgccttgacatcctgtttgccttcaccaagcga
gtgttgggcgaaggcggcgagatggacgtgttacgcgggcagatggaggagcgcttcatg
gcctctaacccctctaaggtgtcttacgagcccatcaccaccaccctccgccgcaaacaa
gaggacatgtcggccatagtcattcagagggccttccgccgctacatgatccgtctggcc
atgaagaaggcctccgccctctacaaggagcagctgaaggagggtatccgcgaccctgac
aaggacgtgatggtcatcagcaaattcaatgagaactccacctcagacaaaacggacatg
actccctctacagcctccccaccctcctacaatagtgtgacgaaatcagacaaggacaaa
tatgagaaagaaaacagagaaaaagaaaacaaagtgaaggacttgaaagaccgaaagaaa
tag
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