Lates calcarifer (barramundi perch): 108901843
Help
Entry
108901843 CDS
T04895
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
108901843
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108901843
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108901843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Activator-TraM
Motif
Other DBs
NCBI-GeneID:
108901843
NCBI-ProteinID:
XP_050929300
UniProt:
A0AAJ8BA83
LinkDB
All DBs
Position
LG10:complement(21187143..21208453)
Genome browser
AA seq
1367 aa
AA seq
DB search
MFNWVVKVVPQPPEVPGTDEDAKTPAADPQKNRQVKSPPLKNTDEASEDSQGQTGVLGWL
SNGFVSALPQPSNSPRLNRANSEARSGEDEERSGVIGWVTQGLTKVLPQPDEKYRETNDN
NNEEHTEVYDVATMPDFDPLPHIPVVEMVSDDESEVESLTPQFPPNMVNWIKQMIPQPVI
LPPGAVLIEPSTKSRSSLDKILSPPPESLSGISLDTDSKASGVVGWFVSGLGLKMPQPAI
PPKDDVICAAEVLQKASTKLKPDMVLEDMESDNEGQQTCEDHSKAPAQSTSLTPPTPTTY
QQQEAIQQTQPNSLQSDANPQSVTKTFQEDAETQTGRWTPFIESIKREAEDVALATMEER
LLQERMEMARMAEEVARQTAEMAIRQMASEGQSIKLSLGSQELLEEPEAELPVPQEEESE
VEHSKVSEKEESIAEAEQKEETEEPAITEPEPKEEAESRRTSPSPPPSPEPEKTSEPEPQ
SEPEPEPEPAPEPEPEPEPEPETEEATSEAKPVTQQPQKAVEDGQGTKDQADKAAEKEEA
TEDGCGESSSLSLRPAVNVEDVDSDNERKGGGRGGGGGRGEEEQSTIPHILTPQDPKLTT
LTVPVTPSGGRQSKGDKDHKYMNEHEAASGRLQSQSEDDDDEGSIPVRAWPSQSSLHSTD
DFLKERPASSASQTSTVVNERLQELVRMFKERTEKAKEKLIDPDSSDEDSVIPSPPQTTA
PQPAPGLQPGGRGEKEAQAGPSGGGGGGGVESKAELEEGQSSSCCKLKAPRWIRACMHYR
FPASIDPFTNIMYVLWMFLVSLAWNWNVWFIPVRWAFPYQTPDNIYYWLVIDYLCDLIYI
LDITIFQPRLQFVRGGDIVCDKKEMRKNYMRTKRFKFDVASLVPLEIFYLKIGINPLLRL
PRLLKINSFFEFNERLEAILTKAYIYRVIRTTTYLLYCLHGNACLYYWGSDFIGLGSTPW
VYNGVGNSYIRCYYFAVKSLITIGGLPDPTTMFEIFFQLINYFIGVFAFSIMIGQMRDVV
GAATAGQTYYRTCMDNTIKYMSSYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLTQLPDK
MRLDIAVDVNYSIVSKVPLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIK
AGEVQVVGGPDGKTVFVTLRAGSVFGEISLLAVGGGNRRTANVIAHGFANLFILDKKDLN
EILVHYPESKKLLRKKARKMLTKGKKPEPKEEPKEPPQVPAAPVRQETPKLLRAALEMTE
RSSGLKGALAKVKEKTYKSSISLQPSFSSSLPPPSPTSSSGPDRDADTPSPVSASSATLH
PASRCQNNSSVTPHSASQCRSDADDQRKEGAGEDEGNEGGKRKEKKL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggtccctcaacctcctgaagttcccgggacagatgaa
gatgccaagacccctgctgctgacccgcagaaaaacagacaggtgaagagtcctccactg
aaaaacacagatgaggcttcagaggacagccagggtcagactggtgtattaggctggctg
tctaatgggttcgtcagtgccctgccacagccgtctaactcccctcgactcaacagggcc
aactctgaagccaggtcaggggaggatgaagaaaggtctggagtgatcggctgggtcact
cagggtctgaccaaagtgctgcctcagcctgatgaaaagtacagagaaactaacgacaac
aacaatgaggaacacactgaggtctatgatgtagcaacaatgccagattttgatcccctc
ccacacatcccagtggtggagatggtgtcagatgatgagtcggaggtagagagtctgacc
cctcagttccctcctaacatggtgaactggataaagcagatgatccctcagccagttata
ctgccccctggtgccgtactcatagaaccatcgaccaagtcccgctcctctctggacaaa
attctgtccccaccacctgaatctctcagtggaatctcactggatactgacagcaaggcc
tcgggtgtggttggctggttcgtgtcagggctgggcctgaagatgcctcagcctgccatt
ccacctaaagatgatgtcatatgtgcagctgaagttctacagaaagcttcaaccaaactc
aaacctgacatggtgctagaagacatggagtcagacaacgagggtcagcagacatgtgag
gatcattccaaagctccagcacaatccacatcgctgactccaccaacaccgacaacatac
caacagcaggaagcaatacagcagacacagcccaattcactgcagtcagatgccaatcca
cagagtgtgacaaaaacatttcaggaggatgctgagactcagacaggccgctggacgcca
tttattgagagcatcaagagggaggctgaagatgtggctttggctaccatggaggaacgt
ctgctgcaggagcgcatggagatggcacgcatggctgaggaggtggccaggcagacagct
gagatggccattagacagatggccagtgagggacagtccatcaaactctcactgggcagt
caagaactgctggaggagcctgaagccgagctaccagtgccacaagaagaagagagtgaa
gtagaacacagtaaagtctcagaaaaggaagagagcattgcagaggcagaacagaaggaa
gagactgaagaacctgctatcacagaaccagagccaaaggaggaagcagagtcacggcgg
acctccccctctccacctccaagtcctgaaccagaaaagacctctgagccagagccccag
tccgagcctgagcctgagcctgaacctgcacctgaacctgaacctgaacctgaaccagaa
ccagagacagaggaagccacttcagaagctaagcctgtaactcagcagccacagaaagca
gtggaagacggtcaaggcaccaaagaccaagctgacaaagccgctgaaaaagaggaagct
actgaggatggctgtggtgagagctccagcctcagccttcgtccagctgtcaatgtagag
gacgttgactcagacaatgaaagaaaaggaggaggaagaggaggaggaggagggcgagga
gaagaagagcagagtactatcccccacattctcaccccacaggatcccaaacttacaacc
ctcactgtccctgtgaccccttctgggggtcgtcagagtaaaggagataaagatcacaaa
tacatgaatgagcatgaagcagcatcaggacgcttgcaatctcaaagtgaagatgatgat
gatgaaggaagcatccctgtcagagcttggcccagccagtccagcctgcacagcaccgat
gacttcctgaaagaacgtccagcgtcttcagccagtcagaccagcacagtggtgaacgag
cgtctgcaggagctggtcaggatgtttaaagagaggacagagaaggccaaggagaaactc
attgaccctgacagctcagatgaagacagcgtcattccctctcctcctcagaccacagct
cctcagcctgctcctggactgcagccagggggtagaggagagaaggaagcacaagcaggt
ccatcaggaggaggtggaggaggaggagtggagagtaaggcagagttagaggaggggcag
tctagcagctgctgcaagctgaaagctcctcggtggatacgagcctgtatgcactaccgt
ttccctgccagcatcgaccctttcactaacataatgtacgtgctgtggatgtttttggtt
tctcttgcgtggaactggaacgtatggttcatcccggtgcgttgggccttcccctatcag
actccagacaatatttactactggctggtgattgactacctgtgtgatctcatttacatc
ttggacatcaccatcttccagccgcgtctgcagtttgttcgtggaggagacatagtgtgt
gacaaaaaagagatgaggaagaattatatgagaaccaaacgcttcaaatttgatgtggcc
agccttgttcccctggagatcttctatttgaaaattggcatcaaccctctgctccgctta
cccaggctgctgaagatcaactccttctttgagttcaacgagcgtctagaggccatcttg
accaaagcctacatctatagggtgatccgtaccaccacctatcttctttattgtctccac
ggtaatgcctgtctctactactggggttctgacttcataggattgggatctactccatgg
gtgtacaatggtgtgggcaacagttatattcgctgttactactttgcggtgaagagcctg
atcaccattgggggtctgccagacccaactaccatgtttgagattttcttccaactcatt
aactactttattggagtctttgccttctctatcatgattggacagatgcgtgatgtggtt
ggtgcagccacagcaggtcagacctactaccgcacatgtatggacaacactattaaatac
atgtcctcatatcgcatccctaaagatgtccagaaccgtgtcaaaacctggtacaactac
acctggcaatctcaaggcatgctggatgagcaggagctgctgactcagttgccagataaa
atgcgtctagacattgctgtagacgtgaattactccatcgtcagcaaagttcctcttttt
cagggttgtgacagacagatgatctttgacatgctgaaaagcttacgctctgttgtctac
ctgcctggggattatgtctgcaaaaagggcgaggtgggacgggagatgtatatcataaag
gctggggaagtgcaggtggttggaggacctgatgggaaaacggtgtttgtcactctgaga
gcgggatcagtctttggagaaatcagtttgcttgcagtaggcgggggtaataggcgcaca
gctaatgtaattgctcatggctttgccaatctcttcatcctggacaagaaagacctgaat
gagatcctggtccattaccctgagtccaagaaactgctccgcaagaaggccaggaagatg
cttaccaagggaaagaaacctgagcccaaagaagagcctaaggaacctcctcaggtacca
gcagcccctgtcaggcaggagacacccaaactgctcagagctgccctggagatgacagag
aggtcctctggacttaaaggagctctggctaaagtcaaagagaagacctacaagtccagt
atctcattacagccctccttctcctcctccctgcctcccccatctcccacctccagctct
ggacccgacagagatgcagatacgccctcgcccgtctctgccagctctgcgacattacac
cctgcttctcgctgccagaacaacagctctgtgacgcctcactccgcatcacagtgccgc
agcgacgcagacgaccaaagaaaggagggtgccggtgaggacgaagggaatgagggcggg
aagaggaaagaaaagaagttgtga
DBGET
integrated database retrieval system
