Lates calcarifer (barramundi perch): 108901868
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Entry
108901868 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108901868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108901868
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108901868
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108901868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108901868
NCBI-ProteinID:
XP_018559036
UniProt:
A0AAJ7VKU6
LinkDB
All DBs
Position
LG10:complement(21587672..21611372)
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AA seq
2380 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGSGIGSSLGMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQ
AQSQQPGGPKPPQPGQPSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSLEEQLSA
PKKEAKPPEEMLPVSTTAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALAGLAPHININ
VNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRM
RVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQ
DNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQI
RLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCM
ADLEQHLHAIPPTLAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGA
DADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHL
VNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCA
HSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLL
REWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAE
QQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQ
DHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVY
AWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTL
RVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLS
EINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLIN
ALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRY
PNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFK
FWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccattgacaatcctctgcac
taccagaagagtttgaagccgtcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtcatatttggccttgctttgctcaactccagcaacacagac
cttcgcggctttgctgcacaattcatcaaacagaaacttccggacctcctgcggtcatac
gttgacgctgatcttggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctgctgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtgtggatgagtgcagaaacataatcctccagtat
ggggtgagagaggtgacggccagccaggtggccagggtcctgggcatgatggctcgtaca
cactctggcctaactgatggcatcccactacagtccatctctgctccaggcagtggtatc
tggagtgatggtaaggataagaacgatggctcgcaggctcacacatggaatgttgaggtt
ctcattgacgttgtcaaagaagtgaatcccaacctaaacttcaaagaggtgacgtacgaa
ctggaccatcctggctttataatccgggacagtaaaggcctgcaaatagtggtgtacggc
attcagagggggttgggcatggaagtcttccctgtcgatctcatctatcggccatggaaa
catgctgagggacagctttcgtttattcagcactccctgatgagcccagaagtgttctgt
tttgctgactacccttgccacaatgtggccactgacattcttaaggccccaccagaggat
gacaaccgggagattgccacatggaaaagcctggacctggttgagagcctgctcaggctg
tctgaggtgggccagtacgagcaggtgaagcagctgtttagcttcccaatcaagcactgc
ccagacatgttggtgttggcattactgcagatctccacctcctggcacacactgcgccat
gaactcatctccaccctaatgcccatctttctgggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccctccatccgtcagctaataatgcat
tctatggctgagtggtacatgagaggggagcagtatgaccaagccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacattcctg
aagaggcgatgtccatctattatggggggtctggccccagacaaggaccagcccaaaagc
gcccagctgcctccagagaccttagccaccatgctggcctgcctgcagtcctgtgctggg
agtgtgtcccaggagttgtcggagacgatcctgaccatggttgccaactgcagcaatgta
atgaataaagcccggcagccaccaccaggggtaatgccaaagggacgtgcccccagcacc
agcagcctagatgccatctcacctgtacagatggaccctctgtctggcatgggttccttg
aacttggggggcacagccacctcccacactcagagcatgcagggttttcctacttcactg
agttcagcttttagtaatccccagtccccagcaaaggctttcccacctctctccaacccc
aaccccagcacaccatttgggggcattggcagcctgtcctcgcagctccctggtatggac
tctggtcccttgggctccggcattggttctggtattggctctagtctggggatgccaaca
gtaagcaccgatccctttggcaccaggaagatgagcacaccaggcctgaatccacctacc
tttcagcagactgacctttctcaggtgtggcctgaggcaaatcagcactttagtaaggag
atagatgacgaagccaacagttacttccagcgcatctacaaccatcctcctcacccaact
atgtctgtggatgaagtactggagatgctgcagaggttcaaggattcaaccattaagcgg
gagcgagaggtgttcaattgcatgcttcggaacttgtttgaggaataccggttcttcccc
cagtacccagacaaggagctgcacatcactgcctgcctttttggtggaattatcgaaaag
ggtcttgtcacttacatggcccttggcttggccctccgatatgtccttgaagccttaaga
aaaccctatggatccaaaatgtattactttgggattgctgccctagataggtttaaaaac
agactaaaggactaccctcagtattgtcaacacctggcttcaattgcccacttcttgcag
ttcccccaccatttacaagagtatatcgagtatggccaacagtcacgggaccctccggtg
aagatgcaaggctccatcacaacacctggcagtttggcactggcacaagttcaggctcag
gcccagtcgcagcaacccggtggccccaaacccccacagcctggtcagcccagcaccctt
gtcaccaccacaacaactacaaccacagcagctaagaccaccaccattacaagaccaaca
cccagcagtttcaagaaggatgtgcctccctccataaacacgaccaatattgacactctg
ctggtggccactgaccaaacagaaaggattgtagagcctccagagaatgtccaggagaag
attgctttcatcttcaacaacctctctcagtccaacatgacacagaaggttgaagagttg
aaagagacagtgaaggaggagtttatgccctgggtgtctcagtacctggtgatgaagcgt
gtcagcattgagcccaacttccacagtctgtactccaactttttggatactctcaagaac
cccgagtttgtcaagatggtcctcaatgagacttacaggaatatcaaggttctcttgacc
tcagacaaggcagctgccaatttctctgatcgctccctgctgaagaatctgggccactgg
ttgggcatgattacactggccaaaaacaagcctatcctctatacagatctggaagtcaag
tctctgctactggaagcctatgtgaaaggccagcaggagctactttatgtggttcccttt
gtggccaaagttttggaatccagtctacggagcatggttttcaggccacagaacccctgg
accatggccataatgaatgtccttgctgagcttcatcaggaacatgatcttaagctcaac
ttgaagtttgagattgaagttctgtgcaagaacctgtctttggacatcaatgacctgaag
ccaggaaacctgctaaaggacaaggagaagctaaagagcctggaggagcagctgtctgca
ccaaagaaagaggcaaagcccccagaggagatgctaccagtctctaccacagctcctccc
tcaaccccagctgccaccaccacaacttgcacaaccaccgggcctccaaccccacagttc
agttatcacgacatcaatgtgtatgccttggctggcctggccccacacatcaatataaat
gtcaatatccctctgctacaggcacatccacagttgaagcagtgtgtacggcaatcagta
gagcgggctgtgcaggagctagtgcatcctgtggttgatcgctctatcaaaatcgccatg
acaacatgcgagcagatcatcaggaaggactttgctctggactcggaggagtcccgcatg
cgtgtcgctgcccaccacatgatgaggaacctgactgccggcatggccatgatcacctgc
cgtgagcccctgctcatgagtattgccaccaaccttaagaacagctttgccgctgctctt
agggcaccaaccccccagcaaagggaaatgatggaagaggctgcagcccggattgctcaa
gacaactgtgaattggcttgctgcttcattcagaaaacagctgtggagaaggctggccct
gaaatggacaagagactagccacggagtttgagctgcggaagcatgcgcgccaagaggga
cgacgttactgtgatcctgttgttctgacttaccaagctgaacgtatgcctgagcagatc
agactcaaggtgggaggagtggaccctaagcaactggctgtgtatgaggagtttgccagg
aacgttccaggtttcttacctagtaatgatctctcacaacccactggtttcttggctcag
cccatgaagcaacaggcatgggccacagatgatgtggctcaaatctatgataagtgcatg
gcagacttggagcaacatcttcatgccatccctcccactcttgccatgaaccctcttacc
caggccttgcgcagcctgttggaggctgtggctttggctaggaactccagggatggcatc
gctgcacttggcctgctgcagaaggctgtggaaggtcttctagatgctaccagtggggct
gatgctgacttgctgctccgctacagagaatgccacctgctggtccttaaagccctgcag
gatggacgtgcctatggaccacagtggtgcaataagcagatcaccaggtgtctgattgaa
tgccgtgatgagtacaaatacaacgtagaggcagtggagcttctgatcaggaaccatctt
gtgaacatgcagcagtatgacctgcacctggcacagtcaatggaaaatggattgcactac
atggcagtagcatttgccatgcagttggtgaagctgctgctggtggatgaacgcagtgtc
agccatgtcacagaggctgacctctttcacacaattgagactttaatgaggacctgtgca
cactccagagccaacgcacctgagggtcttccccagcttatggatgttgttcgctccaac
tatgaagccatgattgaccgggcccacggtggacccaactttatgatgcactctgggatt
tcacaggcctcagaatatgatgatcccccaggcctgagggagaaggcagagtacctcttg
agggaatgggtgaatctgtatcactcagctgctgctggcagggatagcactaaagccttc
tctgcctttgttggccagatgcaccagcaaggcatcttgaagacagatgacctgatcaca
agattcttcaggctgtgcacagaaatgtgtgtggagataagctaccgggcacaggcagag
caacagcacaacccagcagccagtgcagccatcattcgagccaagtgttaccacaaccta
gatgcctttgttaggctcatagccttgctggtcaaacactctggagaggccactaacaca
gtgacaaaaatcaacctcctcaacaaggtgctgggtattgtagttggggtgttgatccag
gaccatgatgtccgtcagacagagttccagcagctgccataccatcgcattttcattatg
ctgctgttggagctcaacgcccctgaacatgtcctggagaccatcaactttcagacgctt
accgccttctgcaataccttccatatcctgagacccaccaaagctcctggctttgtgtat
gcctggctggaactcatctcccatcgcatcttcattgccagaatgctagcacacacacca
cagcagaagggttggcccatgtatgcacagctgctgattgatctcttcaagtacctggcc
cctttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggcacactg
cgagtgcttctggttctgctgcatgacttcccagagttcctctgtgactaccattacggc
ttctgtgatgttatcccacccaactgcatccagctccgcaacctcatcctcagtgccttt
ccacgcaacatgaggctccctgaccccttcacacctaatctcaaggtggacatgctgagt
gagatcaacattgctccccgcatcctcaccaacttcacaggcgttatgccctcccagttc
aagaaggatctggactcgtatctgaagactcgatcaccagtcactttcctgtctgagctg
cgcagcaacctgcaggtgtctaatgagccaggaaaccgctacaacatccagctgatcaat
gctctagtgttgtatgtaggcacacaggctattgctcacatccacaacaagggcagcacc
ccctccatgagcaccatcactcactcggcacacatggacatcttccagaacctggccgtg
gatctggacactgagggacgttacctgttcctgaatgcgattgccaatcagctgcgctac
cccaacagccacactcactacttcagctgcaccatgctctatctgtttgctgaggccaac
acagaggccatccaggagcagatcaccagggttctgttggagaggctaatagtgaacagg
cctcacccatggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaag
ttctggagccatgattttgtgcattgtgcccctgagattgaaaagctgttccagtcagta
gcccagtgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggtgccagc
tag
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integrated database retrieval system
