Longicatena caecimuris: L3BBH23_02950
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Entry
L3BBH23_02950 CDS
T07231
Name
(GenBank) hypothetical protein
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3BBH23_02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcg03021
]
L3BBH23_02950
03400 DNA repair and recombination proteins [BR:
lcg03400
]
L3BBH23_02950
Enzymes [BR:
lcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3BBH23_02950
Transcription machinery [BR:
lcg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3BBH23_02950
DNA repair and recombination proteins [BR:
lcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3BBH23_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BCT43850
LinkDB
All DBs
Position
310957..315144
Genome browser
AA seq
1395 aa
AA seq
DB search
MDKKQPYRIVASGKKAERRDYSKVSGHLELPNLVEIQTDSFEWFKNEGIGEVFNEIYPIQ
NYGGNIKLKFAGYEFGEPKYNAEESMYRECNYAAPLKARMELEITDNTTGEVINKWEDVF
LGDFPLMTETGTFIINGAERVIVSQIVRSPGAYFSTGYDEKTGKVSYACELIPSRGTWLE
YMTETKKASTGRVLNMSIDRKRKMLSSVLFKAVGMSIDLDHSEDAHDTTQIKTFLKAMGR
DVIEDVAQDDEDREFMNLYLTLYASYFGKYEEIENTLLADKVKTTQEALLSIYENQRSDE
IPTLDGSITLMNAKFFDPRRYDLTKAGRFKLRKKLNAINRIYGNRLAMDILASDGSVFMP
SGTMIHRDERNTLREELEKGMHVHAFPFNPLFNHPDKVEVPASNHLGLVGRVLAEDVELS
DATLFEGTVLTQKDVDAIAKECETISVHGGIIAKQVALEKGNVNAVLNYGQRMYALGRVT
DAQGNDLENEEGDFYAEGYLPRHKPDTLSANDQEALRNKVNNGETVYAWLVGAAVQEVLV
RTGDEQVVKVIGNDPYANKHTITISDMYAFYTYNLNVMEGVGETDDIDMLGNRRIRSVGE
LIQNQFRIGLSRMERVVKERMSIAETATLTPKKLTNIRPLTAAIKEFFSSSQLSQFMDQQ
NPLAELTNKRRISALGPGGLTRDRAGFEVRDVHSSHYGRICPIETPEGPNIGLISNLTSY
GKINEYGFIQTPYRIVKKDGTVEDEAIYLSADEEADYVIAQANEVVEGRLINENVVARKA
GETIIAKREEVELADVSPKQIVSVATACVPFLENDDASRALMGANMQRQAVPLLQPHSPY
VGTGIEYKIAKDSGVGIVAKENGIVEYVDSQRIIVSGDDGERHEYRLRKFQRSNNGTNIN
QSPIVKKGERIDKGDILADGPSMEKGELALGQNVTIAYMTWYGYNYEDAIIMSERLVRDD
VYTSIHIEEYDIDCRETKLGPEEITRDIPNVSEAACRNLDSRGIIMVGAEVREGDILVGK
VTPKGQSEISPEEKLLLAIFGEKSREVRDNSLKVPHGGAGIVHSIRIFKRSEGHDLPPGV
NETVKVYIVQKRKISEGDKMAGRHGNKGVISKILPVEDMPYMPDGTPIDIMLNPFGVPSR
MNIGQVLEIHLGYAAKKLGVKFSTPVFDGINNQELSDIMKEADMTVDGKQVLYDGRTGEP
FDERISVGVMYMIKLAHMVDDKLHARATGPYSLVTQQPLGGKAQNGGQRFGEMEVWALEA
YGAAHTLQEILTVKSDDIVGRTKTYEAIIKGKDIPEPGIPESFRVLKHELQALAIDVKML
DEDGNEVDINKEESSEPAALPPIPQEEVVSEEDINDINEDVEVEDDEVLLDDEENMDDFD
EDVLIAEDDEQVEEA
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaaacagccttatcgtattgtcgcttccggtaaaaaggcagagcgtcgcgat
tactcaaaagttagtggacatctggaactgccgaatctggttgaaattcagacggattct
tttgagtggttcaagaacgaaggaattggagaagttttcaatgaaatctacccgattcaa
aactatggaggaaatatcaagctgaagttcgccggttatgaattcggtgaacctaaatac
aatgcggaagaatcaatgtatcgcgaatgtaattacgcagcaccattgaaagcacgcatg
gaacttgaaataacagataacacaacaggtgaagttatcaataaatgggaagatgtcttc
ctaggtgatttccctttaatgaccgaaacaggtactttcatcatcaatggagcggaacgt
gtcatcgtttcgcagatcgtgcgttctccgggagcgtacttctctaccggttatgatgaa
aaaacaggtaaagtatcgtatgcctgtgaattaattccaagccgcggtacttggctggaa
tacatgacagaaacgaaaaaagcgtctaccggacgtgttttaaacatgagcattgaccgt
aaacgtaaaatgctttcttctgtattgtttaaagctgtcggtatgtcaattgatttagat
cacagcgaagatgcccatgatacaacacagatcaagacgttcttaaaggctatgggacgt
gatgtgatcgaagatgttgcacaggatgatgaagatcgtgaattcatgaatctttacctt
acattatatgcatcttactttggtaaatacgaagaaattgagaataccctgttagccgat
aaggttaagactacacaggaagctttattgtctatttatgaaaaccagcgttcggatgaa
atacctaccttggatggttctatcaccttaatgaatgcgaagttctttgatcctcgccgt
tatgatctaaccaaagccggacgttttaaattacgtaagaaattaaatgccatcaaccgt
atttacggtaatcgtttggcaatggatattttggcaagtgatggcagtgtcttcatgcct
agcggtacgatgattcatcgtgatgaacgtaacactttacgtgaagagttggaaaaaggt
atgcatgtacatgctttccctttcaatccattattcaaccatccggataaagtagaagtt
ccggcatctaaccatcttggtcttgttggccgtgttttggcagaggatgtggaattgagt
gatgctaccctgtttgaaggaaccgtattaacacagaaggatgtagacgcaatcgcaaaa
gaatgtgaaaccatttctgtacatggcggtatcatcgcaaagcaggtggctttggaaaaa
ggcaatgtcaatgcagtgttaaactatggacagcgcatgtatgcgttaggccgtgtaacg
gatgcacagggcaatgacctggaaaatgaagaaggtgacttctatgcagaaggctattta
cctcgtcataagccagataccttaagtgcaaacgaccaggaagctttacgtaataaagta
aacaacggtgaaacggtgtatgcatggttggtaggtgcagccgttcaggaagtgcttgta
cgtactggcgatgagcaagtagtaaaagtaatcggtaatgacccatatgcgaacaagcat
accattacgatttccgatatgtatgcattctatacgtataacttaaatgttatggaaggt
gttggagaaaccgacgatattgatatgttgggtaaccgtcgtatccgttctgttggtgaa
ttgatccagaaccagttccgtatcggtttaagccgtatggagcgtgttgttaaggaacgt
atgtccattgcggaaacagcaaccttaacacctaagaaattaacgaatattcgtccatta
acagcagctatcaaggagtttttctccagttctcagctgtcacagttcatggatcagcag
aatccattggcagaattgaccaacaaacgtcgtatttctgccttaggtccaggtggtctg
accagagatcgcgccggttttgaagtacgtgacgttcatagttctcactatggtcgtatc
tgtcctatcgaaactccagaaggtccaaacatcggtctgatttccaacctgacttcttat
ggtaagatcaatgaatatggatttattcagacaccatatcgtatcgttaagaaagatgga
acagtagaagatgaagcaatctacttatcagctgatgaagaagcagattatgttatcgcg
caggcgaatgaggttgtagaaggccgtttgatcaatgaaaatgtcgttgctcgtaaagcg
ggagaaaccatcatcgctaaacgtgaagaagtagaattggccgacgtttcaccaaaacag
atcgtatccgtggcaactgcctgtgtaccattcctggaaaatgacgatgcttctcgtgcc
ttgatgggtgcgaacatgcagcgtcaggccgtacctttgttacagccacattctccatat
gtaggaactggtatcgaatataagattgccaaggactctggtgtcggtatcgtcgcaaaa
gaaaacggtattgttgaatacgtcgattctcagcgcatcatcgtcagtggtgatgatgga
gaacgtcatgaatatcgtttgcgtaaattccagcgttctaacaatggtaccaacatcaac
caaagtccaatcgtaaaaaaaggtgaacgcatcgataagggagatatcctagccgatgga
ccatctatggaaaagggtgaacttgcccttggacaaaacgttacgatcgcctatatgaca
tggtatggctacaactatgaggatgccatcatcatgagtgagcgtttggtacgtgatgat
gtgtatacgtcaattcatattgaagaatacgacattgattgtcgtgaaacaaaattaggg
ccagaagaaattactcgtgacattcctaacgtaagtgaagcagcctgccgtaacttagac
agccgtggtatcatcatggttggtgcggaagtacgcgagggtgacattctggttggtaaa
gtaacaccaaaaggacagagtgaaatctctcctgaagaaaaactgttattagcaattttc
ggtgagaaatcccgtgaagtgcgtgacaactccttgaaggtacctcatggcggtgccggt
atcgtccattctatccgcatcttcaaaagaagcgaaggacatgatctgccacctggagtc
aatgaaaccgtaaaagtttacatcgttcagaaacgtaagatttctgaaggtgataagatg
gccggccgtcatggtaataaaggtgtcatctccaagatcttaccggttgaggatatgcca
tatatgccagatggaacgccaattgatatcatgttgaacccattcggtgtgccatctcgt
atgaacatcggacaggttctggaaatccatttaggatatgccgctaagaaactgggcgtg
aaattctccacaccggtattcgatggtatcaacaatcaggaattaagcgacatcatgaaa
gaagccgatatgaccgtagatggtaaacaggtactgtacgatggacgtaccggtgaacca
ttcgatgaacgtatttctgtcggtgttatgtacatgatcaaactggcgcacatggttgac
gataagctgcatgcccgtgcaaccggaccttattccttagtaacgcagcagccattaggt
ggtaaagcacagaatggtggtcagcgattcggtgagatggaggtttgggcactggaagct
tatggtgctgcccatacactgcaggaaatcttgacggtaaaatctgatgatatcgtagga
cgtactaagacttatgaagcaatcatcaaaggaaaagatattcctgaaccaggcattcct
gaatccttccgcgtattgaaacatgaattacaggcattagccatcgatgtgaagatgctg
gatgaagacggaaatgaagtcgatatcaacaaagaagaatcaagtgaacctgctgcactg
ccaccaattccacaggaagaggttgtcagtgaagaggatatcaatgatataaatgaagat
gttgaagttgaagatgatgaagtgcttttggatgatgaagaaaacatggatgacttcgac
gaagatgtattaattgcagaagatgatgaacaagtagaggaggcgtaa
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integrated database retrieval system
