Novilysobacter ciconiae: INQ41_02455
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Entry
INQ41_02455 CDS
T08092
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INQ41_02455 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcic03021
]
INQ41_02455 (rpoB)
03400 DNA repair and recombination proteins [BR:
lcic03400
]
INQ41_02455 (rpoB)
Enzymes [BR:
lcic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INQ41_02455 (rpoB)
Transcription machinery [BR:
lcic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INQ41_02455 (rpoB)
DNA repair and recombination proteins [BR:
lcic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INQ41_02455 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QOW19940
UniProt:
A0A7S6ZSL2
LinkDB
All DBs
Position
539248..543417
Genome browser
AA seq
1389 aa
AA seq
DB search
MTTASTTNYSFTEKKRIRKDFGKSRSILEVPFLLAIQVDSYRRFLQEDVAPAKREERGLH
AALKSVFPISSYSGNAALEYVDYKLGEPAFDERECRQRGMSYGAPLRVTVRLVIYDRESS
TKAIKYVKEQEVYMGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKL
LYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTILLRALGYTNEEMLAEFFEVNTF
HVDPKEGVQLELVPERLRGETLDFDLADGDKVIVEAGRRITARHVKQLEAAGIDALAVPD
EYLIGRILSHDVIDASTGELIAAANDEITDEHLALFRKAGIDALGTLWVNDLDRGAFISN
TLRIDPSKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFDRYDLSAVGRMKFNRRI
GHKEVTGASVLYDERYFSQRKDEESKKIAADVGEGSDILDVLKVLTEIRNGRGIVDDIDH
LGNRRVRSVGEMAENTFRVGLVRVERAVKERLSMAEADGLTPQDLINAKPVAAAVKEFFG
SSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGP
NIGLINSLAVFARTNEYGFLETPYRKVVDGKVTDEVEYLSAIEENEYVIAQANAPQDAKG
VLSELFVDCRYQGESMLKPPLEVDFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQR
QAVPTLRAQKPLVGTGIERAVARDSGVTVNALRGGTVEQIDAARIVVKVNEDEISNETDA
GVDIYNLIKYTRSNQNTCINQTPLVNVGDVISRGDVLADGPSTDIGELALGQNMLIAFMP
WHGYNFEDSILLSERVVQEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLD
ESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDG
NVIDVQVFTRDGIEKDARAKQIEESEVRRVKKDFDDQFRILEAAIYSRLRSQLIGKVANG
GAGVKKGETVTSLVLDGLSRKDWFSLRMKDDSAVEAIERAQKQLDVHEKEFERRFADKRA
KITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTLVPVQDMPYLADGQTV
DIVLNPLGVPSRMNIGQVLEVHLGWAAKGLGEKIQRMLDARAKVAELRKFLDEIYNHDTK
LHGQRVDLKQFSDDELLALAGNLTDGVPMATPVFDGAAESEIKSMLKLADLPESGQTTLY
DGRTGEAFDREITVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYETVAGMPESFNVLVKEIRSL
AINMELEEN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagcttccacgacgaattattcgttcaccgaaaagaagcgcatccgcaaggac
ttcggcaagagccgatccatcctcgaggtgccgttcctgcttgccatccaggtcgattcc
tatcgccgtttcctgcaggaggacgtcgcaccggccaagcgcgaggagcgcggcctgcac
gcggcgctgaagtccgtgttcccgatttccagctatagcggcaacgcggcgctggaatac
gttgactacaagctgggcgagccggcgttcgacgagcgcgagtgccgccagcgcggcatg
agctacggcgccccgctgcgcgtcaccgtgcgcctggtgatctacgaccgcgagtcctcg
accaaggccatcaagtacgtgaaggagcaggaggtctacatgggcgagattccgctcatg
accggcaacggcaccttcatcgtcaacggcaccgagcgcgtgatcgtgtcccagctgcac
cgcagcccgggtgtgttcttcgaccacgaccgtggcaagacccacagctccggcaagctg
ctctacagcgcgcgcatcattccctaccgcggctcgtggctggacttcgagttcgacccc
aaggatgcgctgttcacccgtatcgaccgccgccgcaagctgccggtcaccatcctgctg
cgtgccctgggctacaccaacgaggaaatgctggccgagttcttcgaggtcaacactttt
cacgtcgaccccaaggaaggcgtccagctggaactggtgcccgagcgcctgcgtggcgag
acactggacttcgacctggccgacggtgacaaggtcatcgtggaagccggtcgccgcatc
accgcgcgccacgtcaagcagctcgaagccgccggcatcgacgcgctggccgtgcccgac
gagtacctgatcggccgcatcctctcgcacgacgtgatcgacgccagcaccggcgagctg
atcgccgccgccaacgacgagatcaccgacgagcatctggcgctgttccgcaaggccggc
atcgatgccctgggcaccctgtgggtgaatgatctggaccgcggcgcgttcatctccaac
accctgcgcatcgatccgagcaagacccagctggaagcgctggtcgagatctaccgcatg
atgcgtcccggcgagccgccgaccaaggatgccgcgcagaatctcttccacaacctgttc
ttcaccttcgaccgctacgacctgtcggccgtgggccggatgaagttcaaccgccgcatc
ggccacaaggaagtcaccggcgcctcggtgctctacgacgagcgctacttctcccagcgc
aaggacgaggagtccaagaagatcgccgccgacgtgggcgagggttccgacatcctcgac
gtgctcaaggtgctgaccgagatccgcaacggtcgcggcatcgtcgatgacatcgaccac
ctgggcaaccgccgcgtgcgttcggtcggcgagatggccgagaacaccttccgcgtcggc
ctggtccgggtggagcgtgcggtcaaggagcgcctgtcgatggccgaggccgatggcctg
accccgcaggacctgatcaacgccaagccggtcgcggccgcggtcaaggaattcttcggc
tcctcgcagctgtcgcagttcatggaccagaacaacccgctctcggaggtcacccacaag
cgccgcgtgtccgcgcttgggccgggcggcctgacccgcgagcgtgccggctttgaagtg
cgcgacgtgcacccgacccactacggccgcgtgtgcaccatcgagacgcccgaaggcccg
aacatcggcctgatcaactcgctggcggtgttcgcccgcaccaacgagtacggcttcctg
gagacgccgtaccgcaaggtcgtggacggcaaggtcaccgacgaggtcgagtacctgtcg
gcgatcgaggagaacgagtacgtcatcgcccaggccaacgcgccgcaggacgccaagggc
gtgctcagcgagctgttcgtggactgccgttaccagggcgagtccatgctgaagccgccg
ctggaggtggacttcatggacgtctcgccgatgcagaccgtgtcggtggccgcggcgctg
gtgccgttcctggagcacgacgacgccaaccgcgcgttgatgggcgccaacatgcagcgc
caggcggtaccgacgctgcgtgcgcagaagccgctggtcggcaccggcatcgagcgcgcc
gtggcgcgcgactcgggcgtgaccgtgaacgcgctgcgcggcggtaccgtagagcagatc
gacgcggcccgcatcgtggtcaaggtcaacgaggacgagatcagcaacgagaccgacgcc
ggcgtcgatatctacaacctgatcaagtacacccgttccaaccagaacacctgcatcaac
cagaccccgctggtcaacgtgggcgacgtgatctcgcgcggcgacgtgctggccgacggt
ccgtccaccgacatcggcgagctggcgctgggccagaacatgctgatcgcgttcatgccg
tggcacggctacaacttcgaggattccatcctgctctccgagcgggtggtccaggaggat
cgttacaccacgatccacatcgaggagctgacctgtgtcgcgcgtgacaccaagctgggg
ccggaggagatctccgccgacatccccaacgtctccgagcaggcgctgaaccgcctggac
gagtccggcgtggtctacatcggcgccgaagtgcgcgccggcgacatcctggttggcaag
gtcacgcccaagggcgagagccagctgaccccggaagagaagctgctgcgggcgatcttc
ggcgagaaggcgtccgacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggc
aacgtcatcgacgtgcaggtcttcacccgcgacggcatcgagaaggatgcgcgtgccaag
cagatcgaggaatccgaagtccgccgcgtcaagaaggacttcgacgaccagttccgcatc
ctggaggcggcgatctacagccgcctgcgcagccagctgatcggcaaggtcgccaacggc
ggcgccggcgtgaagaagggcgagaccgtcaccagcctggtgctggacgggctgtcgcgg
aaggactggttcagcctgcggatgaaggacgactctgccgtcgaggcgatcgagcgggcg
cagaagcagctggacgtgcacgagaaggaattcgagcgccggtttgccgacaagcgcgcc
aagatcacccagggcgatgacctcgccccgggcgtgctgaagatggtcaaggtgttcctg
gcggtcaagcgccgcatccagccgggcgacaagatggctggccgccacggcaacaagggc
gtcgtatcgaccctcgtgccggtgcaggacatgccctacctggccgacggccagaccgtg
gacatcgtgctcaacccgctgggcgtgccaagccgcatgaacatcggtcaggtgctggaa
gtccacctgggctgggcggcaaagggcctgggcgagaagatccagcgcatgctggatgcc
cgcgccaaggtcgccgagctgcgcaagttcctcgacgagatctacaaccacgacaccaag
ctgcacggccagcgcgtggacctcaagcagttcagcgacgatgagctgctggccctggcg
ggcaacctgaccgacggcgtgccgatggcaacgccggtgttcgacggtgccgccgagtcg
gagatcaagtcgatgctgaagctggcggacctgcccgagagcggccagaccacgctgtat
gacggtcgtaccggcgaggccttcgatcgcgagatcacggtcggctacatgcacatgctg
aagctgaaccacctggtcgacgacaagatgcacgcccgctccactggcccgtactcgctc
gtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggtgagatg
gaagtctgggcgctggaggcctacggcgcggcgtacacgctgcaggaaatgctgacggtc
aagtccgacgacgtgcagggacgcaaccagatgtacaagaacatcgtcgatggcgagtac
gagacggttgccggcatgcccgagtcgttcaacgtgctggtcaaggagatccgctcactg
gcgatcaacatggagctggaagagaactga
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