Latimeria chalumnae (coelacanth): 102345241
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Entry
102345241 CDS
T02913
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102345241 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102345241 (CNOT1)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102345241 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102345241 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102345241
NCBI-ProteinID:
XP_006004672
Ensembl:
ENSLACG00000010869
LinkDB
All DBs
Position
Un
AA seq
2421 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFIATLCYAIDNPLHYQKSLKPSTHLFAQLSKVLK
LSKVQEVIFGLALRNSSSLDLRGFGVQFVKQKLPDLLRSYVDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIEAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGFGFCASAEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLADGIPLQSISAGGGIWEMKDKNDGTQALTWNVEVFIDVVKELNPNLNFKEVTYELD
HPGFQIRDNKGLQIVVYGIQRGLGLEGFPVDLIYRSWKHAEGQLSFIQHSLMSPDVFCFA
DYACHTVSTDILKAPPEDDNREIATWKSLDLIESLLRLSEVGQYEQVKQLFNFPIKHCPD
MLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAM
AEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQACAGSV
SQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQIDPVAGMASLTI
GSSAASHTPSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTPFSGIGGLSSQLPVIQPS
KIEFKREPFLKSEVLPFTSSSGGLGTGSLTGMGTGTLGLPAVNSDPFGQRKMSTSGLNPP
TFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFK
DSSIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRY
VLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQ
SRDPPVKMQGSITTPGSIALAQAQAQAQVPPKAPLAGQVSTMVTTSTATTVAKTITITRP
TGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEE
LKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLL
TSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHMDLDVKSLLLEAYVKGQQELLYVVP
FVAKVLESSVRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDITEL
KPGSLLKDKEKLKNLEEQLSAPKKETKPPEELPPITATVGVCLQESSSMKNLISGFMSFA
AAPATPASTITYTATGPPQPQFSYHDINVYSLAGLAPHITINPTIPLFQAHPQLKQCVRQ
AIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMI
TCREPLLMSIANNLKNSFATALRAASPQQREMMEQAAAQIAQDNCELACCFIQKTAVEKA
GPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEF
ARNIPGFLPSNDISQPTGFLAQPMKQAWATDDVAQIYDKCIADLEQHMHAIQPALAMNPQ
AQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKAL
QDGRAYGSQWCNKQITRCLIECRDEYKYNVEAVDLLIRNHLVNMQQYDLHLAQSMENGLN
YMAVAFAMQLVKILLVDERSVGHITEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRS
NYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKA
FSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAVNPTMIRAKCYHN
LDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFI
MLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHT
PQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHY
GFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQ
FKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGS
TPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEA
NTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS
VAQCCMGQKQAQQVMEGTGAS
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaattaccgagccagccagcaagagatacaacatattgtgaacagacacggc
cccgaggcagacaggcatttattacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggattttcatcagactcaatttctgatacaggagtgtgcgtca
ctgattacaaagccgaactttatcgcgacgttgtgttacgccattgacaatccattgcac
tatcagaagagtctaaaaccttcaacccatttatttgctcagctgagtaaagttcttaag
ttaagcaaagttcaggaggttatttttggtcttgctctgcggaactcttccagtttagat
cttcgaggttttggtgtccagtttgtaaagcagaaacttcctgatctcttgcgctcctac
gttgacgcagacgtgagtggaaatcaagaaggtggcttccaagatattgctatagaggtc
ctgcacctactcctctcccacctcctctttgggcagaagggagcttttggggttggacag
gagcagatagaagctttccttaagacgttgcgtagagattttcctcaggaacgttgccct
gtggtgcttgcaccactcttgtaccctgaaaaacgggacattctgatggatagaattctg
cctgattctggtggcatagccaaaactatgatggagagctcactggcagatttcatgcaa
gaagtaggcttcggcttttgtgcaagtgctgaagaatgccgcaacataattgtgcagttt
ggcgttcgggaggtcacagctgcccaggttgccagagttttgggaatgatggcccgaact
cattctggtttggctgatggtattccattacagtcaatctcagctggtggtggaatctgg
gaaatgaaagataagaatgatggaactcaagccctcacctggaatgtggaagttttcatt
gatgttgtcaaagagctgaatcctaacctgaacttcaaagaagtgacatatgaactggac
caccctgggtttcagatccgtgacaacaaggggctgcagattgtggtgtatgggatccag
aggggtctgggattagaaggctttccagttgacctaatctatagatcctggaaacacgct
gaaggccagctctcatttattcagcattcccttatgagcccagatgtcttctgctttgcg
gattatgcttgtcatacagtctcaacagacatcttgaaagcgcctccagaagatgacaac
cgggaaattgccacatggaaaagcttggatctaatagaaagcctactgcgcttgtcggag
gtggggcagtatgagcaggtgaagcaactctttaactttcccatcaagcactgcccagat
atgctggtactggccttgttgcagataaacacttcctggcatactttgcgacatgaactt
atctccacactaatgccaatcttcctgggcaatcaccccaactctgccataatattgcac
tacgcatggcacggacagggtcagtctccttcaatcagacagttgataatgcacgcaatg
gcagagtggtacatgcgaggagagcaatatgaccaggcaaaactctcacgcattttggat
gtggcccaggacttaaaggccttgtcaatgctgctaaatggtactccgtttgcctttgtt
attgaccttgctgcacttgcctctcgtcgagaatacctcaaacttgataaatggctgacg
gacaaaatacgtgagcatggagaaccttttattcaggcttgtgttacatttctaaagaga
cgctgcccatccatcatggggggccttgccccagagaaagatcaaccgaaaagtgctcag
ttgcctccagaaacactggctactatgctggcatgtctacaagcttgtgcagggagcgtt
tcccaggaactgtcagagaccatcctcactatggtggctaactgtagcaatgtcatgaac
aaagccagacagccacctccaggagtcatgccaaagggtcgagcacccagcaccagcagt
ttagatgccatttcccctgtgcagattgatcctgttgctggaatggcttcattaactatt
ggcagctcggctgcctcccacaccccaagtatgcagggttttcctccaaacctaggctct
gctttcagcacgcctcagtcaccagcaaaagcctttcctcctctttccactcctaaccaa
actactcctttcagcggcattggagggctttcttcacagcttccagttatccagccgtct
aaaatagagttcaaaagggaaccttttcttaaaagtgaggtgttgccttttacctcctct
tcaggtggtctgggtacaggcagccttactggcatggggactggaacactaggactccca
gcagtaaacagtgatccttttggacagagaaagatgagcacatcaggactgaacccacct
acattccagcagagtaagatgaaaccttctgacctctctcaggtgtggccagaggcaaac
cagcactttagtaaagaaattgatgatgaggcaaacagctactttcaacgcatttacaac
catccaccacaccccaccatgtcggtagatgaggtcctggaaatgttgcagaggtttaag
gactccagcattaagcgtgaacgggaggtgtttaattgtatgttgaggaacttgtttgag
gagtaccgtttcttcccccagtacccagataaagagctgcacatcactgcttgcctcttt
ggcgggatcattgagaaaggactggtcacttacatggcgctggggctggccctacgctat
gttcttgaggccttacgcaaaccttatggatccaaaatgtattactttggcattgctgca
ctagatagatttaaaaatagattgaaggactacccccagtattgtcagcacttggcatct
attggacactttctacagttccctcatcatttacaggagtatattgaatatgggcagcag
tccagggaccctcctgtgaagatgcagggctcaatcactaccccaggcagtattgcactt
gcacaagctcaggcccaggctcaagtccctcccaaagctccactggctggacaggtcagc
accatggtgacaacgtccacagccaccaccgtggctaaaaccattaccatcactcggcca
actggagtaagtttcaagaaagatgtacctccctcgatcaacacaaccaacattgatact
ttattggtggctacggaccaaactgaaaggatagtggagccccctgaaaatgtccaggag
aaaattgctttcatttttaacaacctttcccagtccaacatgacacaaaaggttgaggaa
ttgaaggagactgttaaagaggagtttatgccctgggtatcgcagtatcttgtcatgaag
agagtcagcattgagccaaattttcacagcctttattcaaacttcctagacacactcaaa
aatcctgagttcaacaagatggtgctcaatgaaacctacagaaatattaaggtgctactg
acatctgacaaggctgcagctaatttctctgaccgatccctactaaaaaatctgggccac
tggctgggaatgattactttagcaaagaataaaccgatcttgcacatggatttggatgtc
aagtctttgcttcttgaagcttatgtgaagggacagcaagagctactgtatgtagtacca
tttgttgccaaagttctagagtcaagtgtgagaagtgtggtgttccgacctccaaaccct
tggacaatggccattatgaatgttttagcagagctgcatcaggaacacgatttaaagtta
aacttgaagtttgaaattgaggtgctgtgcaaaaaccttgctttggacattactgaactg
aaaccaggcagcctcctcaaggataaagagaagcttaagaacttggaagaacaactgtct
gctccaaagaaagagaccaaaccccctgaagaattgccgcccattacagctactgttggc
gtttgtcttcaggaatcctcatcaatgaagaaccttatcagtggtttcatgtcttttgca
gctgcaccagcgacgccagcttccaccatcacatacacagctacaggccctcctcagcct
cagttcagctaccatgacatcaatgtttactctctggcaggccttgctccacatatcact
ataaaccctactattcctttattccaagcccacccacagttgaaacagtgtgtgcgtcag
gcaattgagcgggctgtccaggagcttgtccacccggtggtagatcgttctatcaagatt
gccatgacaacttgtgaacagattgttaggaaagattttgcactggactcagaggagtcg
cgcatgcgagtggcagctcatcacatgatgcggaacttgactgctggtatggccatgata
acctgcagggagccccttctaatgagcattgctaacaacctgaagaacagttttgccact
gcactgcgtgctgcatctcctcagcagagagagatgatggaacaggcagctgctcagata
gcacaagacaattgtgagttggcctgctgcttcatccagaaaacagctgttgaaaaggca
ggacctgagatggataagaggctagctactgagtttgagctgaggaagcacgcccggcag
gaaggtcgcagatactgtgatccagtggttctcacttaccaagctgaacgcatgccagag
caaatcagattaaaggttggaggcgtggaccccaaacagctggctgtttatgaggagttt
gcacgcaacatcccaggatttctacccagcaatgatatctcgcaacccacaggcttcttg
gctcaaccaatgaagcaagcctgggccacagatgatgttgcacagatatatgataagtgc
attgcagatttggagcagcatatgcatgctatccaacctgctctagctatgaaccctcag
gctcaggctcttcgcagcttgctggaggctgtagtggtggccagaaactcacgtgatgca
attgctgcattgggactcctgcagaaggctgtggagggactacttgatgcaaccagtggt
gctgatgctgacctcctgcttcgctatcgtgaatgtcacttgttggtactgaaagccctg
caggatggccgtgcctatggctcccagtggtgtaacaagcagatcacaaggtgcttgatt
gagtgccgtgatgagtacaagtacaatgtggaggctgtggaccttttgatccgaaaccac
ctggttaacatgcagcagtatgacctgcacctggctcagtcaatggagaatgggttgaac
tatatggcagtggcttttgctatgcagttagtgaagatcttattagtggatgagcgaagt
gtgggccacattactgaagctgatttgttccacaccattgagaccttgatgaggatcaat
gcccactccaggggaaatgcaccagaaggattgcctcagctaatggaggtggtgcgctct
aactacgaggcaatgattgaccgtgctcatggaggaccgaacttcatgatgcactcagga
atatcccaggcatcagagtatgatgatcctcctgggctaagggagaaggcagagtacctg
ctgagagagtgggttaatctgtatcattcagctgcagctgggcgtgacagtaccaaagcc
ttttctgcttttgtggggcagatgcaccagcaggggattttgaaaactgatgacctgata
acccgtttcttccgcttgtgcactgaaatgtgtgttgagatcagttatcgggcacaggca
gaacagcaacacaaccctgcggtgaacccaaccatgatccgagccaaatgctaccacaac
ttggatgcctttgttaggctgattgcactgctggttaaacactcgggagaggctaccaat
actgtcaccaaaatcaacttgcttaacaaggtccttggtattgtagtgggggtcctcttg
caggatcatgatgttcggcaaagtgagttccagcagctaccctaccaccgtatttttatt
atgctgctgttggagctgaatgcccctgaacacgtgttggaaaccatcaatttccagaca
ctcacagcattctgcaacacattccacattctgaggcccactaaagctcctggttttgtg
tatgcttggctagaactcatctcacacaggatatttattgcaaggatgctggctcataca
ccacaacagaagggctggccaatgtatgcccagctgctgattgatctgttcaagtacttg
gcccctttcctgagaaacgtggagctcaccaaacctatgcaaatcctttataagggaact
ctgcgtgtactgcttgtactgttgcatgattttccagaattcctgtgcgattatcattat
ggtttctgtgatgttattccaccaaactgcattcagttgaggaacctgatcctaagtgct
tttccacgcaacatgaggcttccagatcctttcactcctaacctaaaggtggacatgcta
agtgaaatcaatattgcgccacgtattctaactaattttactggagtaatgccacctcag
tttaagaaggacttagattcatacctgaagacacgttctccagtaactttcctctctgag
ctccgcagcaatttacaggtatcaaatgagcctggtaatcgttacaacatccagctgatc
aatgcattggtactctacgttgggactcaagctattgcacacatccacaacaagggcagt
actccatcaatgagcaccatcacccactctgctcacatggacatctttcagaacctggct
gtggacctggacactgagggtcgatatctcttcttgaatgcgattgccaatcagttgcgt
taccccaacagccacactcactacttcagctgcactatgctgtacctgtttgcagaagcc
aacacggaggcaattcaggaacaaattaccagggttctgttggaaagattgattgtaaac
cggcctcacccttggggtctgctaattacattcatcgagctgattaaaaacccagccttc
aagttctggaaccatgagtttgttcactgtgcacctgaaatcgaaaagttgttccagtca
gtggctcagtgctgcatgggacagaagcaagcacagcaggtgatggaaggcactggtgcc
agttaa
DBGET
integrated database retrieval system
