Leuconostoc carnosum: C270_01015
Help
Entry
C270_01015 CDS
T02321
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcn
Leuconostoc carnosum
Pathway
lcn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C270_01015 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcn03021
]
C270_01015 (rpoB)
03400 DNA repair and recombination proteins [BR:
lcn03400
]
C270_01015 (rpoB)
Enzymes [BR:
lcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C270_01015 (rpoB)
Transcription machinery [BR:
lcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C270_01015 (rpoB)
DNA repair and recombination proteins [BR:
lcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C270_01015 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFT81122
UniProt:
K0DC79
LinkDB
All DBs
Position
220506..224120
Genome browser
AA seq
1204 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDDGIKEMFGDIMPIDDFQG
TLSLEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGIYYNQENDKNGRPRYGTTVIPNRGAWLEYETDAKGIA
NVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDSRVEEALK
DVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQTLAETL
ADPDSGEVIVEKGTLVDKTVMSKLSPFLDREDFKTTTYTPSGDAVLEEPVTLQKIKIESP
ANPEKTLVLIGNGHIDADDRTVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGE
LLQNQFRIGLTRMERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQT
NPLGEMNHKRRLSALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATY
GRINKYGFIETPYRRVDWTTHKVTEKIDYLTADEEDNFIVAQANSPLNDDGSFVHETVMA
RFGEENIETPIDRIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPH
APLVGTGIEYKAAHDSGVAMISRAAGMVEYVDGHQIRVRREDGQLDTYELMKFRRSNGGK
NYNQKPIVHEGEHIEADEVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIVLNERLV
REDVYTSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRIGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELA
PGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYMPDGTPIDILLSPMGV
PSRMNIGQVLELHLGFAAKKLGIHVASPVFDGASDDEIEAALREAGLPQDGKSVVYDGRT
GEAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGEPIPRPGVPESFRVLVKELQALGLDM
QVLDGAGSEVELRQMDEDDSILPVDALEKLARTNPDLLNKEDEEVAAAFSKVETQDKSEV
NNEL
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggacatttagtaaagtatggtaaacatcgtacccgtcgttcatatgctagcatc
aaagaagttcttgatgtgccaaatttgattgaaattcaaacggcgtcatatcaatggttc
ttagacgatggtattaaggaaatgtttggtgatatcatgccaatcgatgactttcaaggg
actttgtctttggaatatgtcgattatcaattgatggaaccaaaatataatattgatgag
gcacgtgaacacgatgccaactattcagcgccattacacgtaactttgcgtttgacaaac
catgaaaccggtgaaatcaagtcgcaagacgtattctttggcgattttccattgatgact
gaacagggaactttcatcattaatggtgcagaacgtgttattgtttcacagttagtgcgt
tcccctggtatttattataatcaagaaaatgataaaaacggacgaccacgttacggtact
acggttattcctaaccgtggtgcatggttagaatacgaaaccgatgccaaaggtatcgcc
aatgtacgtattgaccgcacacgtaagttgttgatgactgaattagtgcgtgcacttggt
tttggttcagattcagatattattgatattttttcagatcaatatgatgctttgaacatg
actttggaaaaagatgtgcataaagacatgtctgattctcgtgtcgaagaggctttaaag
gatgtttacgaacgtttgcgtccgggcgaacctaagacagccgattcatcacgtgcgttg
ttagtcgcaaggttctttgatccaaaacgttatgatttggcatctgttggtcgttataaa
gttaacaaaaagttgtcgttaaagacacgcttattgaatcaaacattagctgaaacatta
gctgatccagattcaggtgaagttattgttgaaaagggaacgttggtagataagacagtg
atgtcaaaactatcaccattcttggatcgtgaagatttcaagacaacaacatatacacca
tctggtgatgcagttcttgaagaacctgtaacacttcagaaaatcaagattgaatcacct
gcaaacccagaaaagacattagtattgattggcaatggtcatattgatgctgatgaccgt
acagtacgtcctgcagatattttggcaggtatgaactacttcttgaacttacaagaaggt
atcggtaacgttgatgatatcgatcatttaggtaatcgtcgtatccgttctgttggggaa
ttattacaaaatcaattccgtatcggattaacacgtatggaacgtgttgttcgtgaacgt
atgtcaattcaagatgccaacacggtgacaccacaacaattaattaacattcgtccagtt
gttgctgctgttaaggaattctttggttcatcacaattgtcacagttcatggatcaaact
aacccattgggtgaaatgaaccacaagcgccgtttgtcagctcttggaccgggtggtctt
acgcgtgatcgtgccggcgttgaagttcgagatgttcactatacacattatggtcgtatt
gacccaattgagacgccagaaggtccaaacatcgggttaattaactccttggcaacatat
ggtcgtatcaacaagtatggctttatcgaaacgccataccgacgtgttgattggacaacg
cataaagttaccgaaaaaattgattatttgactgctgatgaggaagataacttcattgtt
gcacaagctaactcacccttaaatgatgatggtagctttgttcacgagacagttatggct
cgtttcggtgaagaaaatatcgagacaccaattgaccgtattgactacatggacgtttcg
ccaaagcaggttgtttcagttggtactgctgcaattcctttcttggaaaacgatgattcg
aaccgtgcgttaatgggtgccaacatgcaacgtcaagctgttccactgcttgatccacat
gcaccacttgttggtactggtattgaatataaagcagcccatgattcgggtgttgctatg
atatcacgtgcagccggtatggttgaatatgttgatggtcatcaaattcgtgttcgtcgt
gaagatggtcaattagatacatatgaattgatgaaattccgtcgttcgaacggtggtaaa
aactataaccaaaagccaattgttcatgaaggtgaacatattgaagctgatgaagttttg
gcagatggtccttcaatggaacaaggtgaattagccttgggacaaaacccattaattgcc
tttatgacatggcagggttataacttcgaagatgccattgttttgaatgaacgtttggtt
cgtgaagatgtttatacgtcaattcacatagaagaatacgattcagaagctcgagataca
aaacttggaccggaagaaatgacacgtgaaattcctaatactggtgaagatcagttgaag
gatttggatgctgatgggattatccgcatcggagccgaagttcatgatggcgacattttg
gttggtaaggtaacaccaaagggtgtgacagaattatcagctgaagaacgtttgttacat
gctatctttggtgaaaaagcacgtgaagtacgtgatacgtcactacgtgtacctcatggc
ggcggcggtgtagttcagaatgttcgtatttatacacctgaaaatggtgatgaacttgca
ccaggcgtgaatatgatggtccgtgtttatattgcacaaaagcgtaagattcaagttggt
gataaaatggctggtcgtcatggtaacaagggaactgtttccgttgttgttcctgaagaa
gatatgccatatatgcctgatggtacaccaattgatatcttgttgtcacccatgggtgtg
ccttcacgtatgaatattggtcaagtacttgaattacacctaggttttgccgctaaaaaa
cttggcattcatgttgcatcacctgtctttgatggtgcatctgatgatgagattgaagca
gctttgcgtgaagctggtttgccacaagatggtaagtctgttgtctatgatggtcgcacc
ggtgaagcatttgataagcgcgttggtgtgggtgtcatgcattatatgaagttagctcac
atggttgacgataaaattcatgcacgttcaatcggaccttactcacttgttacacaacag
cctttgggtggtaaagcacaattcggtggacagcgtttcggtgaaatggaagtttgggca
cttgaagcttatggtgcagcatatacattgcaagaaattctgacttataagtcagatgat
gttgctggtcgtgtgaaggtttatgaatcaattattaagggtgaaccaattccacgtcct
ggtgtaccagaatctttccgtgtgttggttaaagaattacaagcacttggattggatatg
caagtattagatggtgctggtagtgaagttgaacttcgtcaaatggacgaagatgactct
atattacctgttgatgcacttgaaaagttagcacgtacaaatcctgacttgttaaataaa
gaagatgaagaagttgctgcagcattttcgaaggttgaaacccaagacaaatctgaagta
aataacgaattgtaa
DBGET
integrated database retrieval system
