Larimichthys crocea (large yellow croaker): 104926395
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Entry
104926395 CDS
T04659
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lco04040
]
104926395
Ion channels [BR:
lco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104926395
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
ATP-synt_B
GPHH
Spem1
New_glue
IQ
PKD_channel
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
104926395
NCBI-ProteinID:
XP_019113019
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Position
XIX:1719695..1753210
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AA seq
2015 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAVERRIAEEEARRPRVERRSDSDDENGPKPNSDLEAGK
SLPFIYGDIPPPLVSTPLEDMDPFYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRR
VAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMPVSSNSSNVTIDDEMMYNF
TLQNATDNSFNWTEYMSDESNYYYLPGRRDALLCGNGSGAGLCPEGFTCIKAGRNPDYGY
TSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVV
AMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGPTSESS
SGTSKLSSKSAKERRNRRKKRKQREEEEERGVRDKFHKSESEDSIKRSSFRFSIDANRLS
YEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEESDSR
RGSLFLPRRLERRCSAVSQTSLGAPRIVLPANGKMHCAVDCNGVVSLVGGTSVTTSPVGL
LLPEGTTTDTELKKRRSGFHQPSMDYLEEPGGRQRAMSVASILTNTMEELEESRQKCPPC
WYRFANTCLIWDCCPAWLKIKEVVNMVVMDPFVDLAITICIVLNTLFMAMEHYPMTKEFD
NVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
ECVCKISEDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKTTVRHFLQSL
CFGGGGKGSGLAEESKPLDELHSNGKGNCISNHTSVEITKDPSGVYMTEGNGRPGGGLVV
GVVVGGDTTEKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSK
EKLDVEPQRLSSSEGSTVDIRPPGDGVDSVELEPEESLDPEACFTEGCVRRFQCCQINEE
GPKYKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDVYIEQRRTVKTVLEYADK
VFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKSLRT
LRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCV
NTTSDEIFPIDIVNNKTDCLNLVNDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMY
AAVDSRNLEDQPKYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPANAFQGCVFDCITKQAFDIVIMILICLNMVTMM
VETDDQTPDMDKTLYWINLVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIVGM
FLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFL
VMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSGGWDTLLAPILNKREP
DCDSQIEHPGNNYRGNCGNPSVAIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEP
LSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIQLISMDLPMVSG
ERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEDMSA
TIIQRAFRHYMIRLAMKKASALYKEKLKEGIRDPDKDVMVISKFTENSTSDKTDMTPSTA
SPPSYNSVTKSDKDKYEKENREKENKGKDLKDRKK
NT seq
6048 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccgtcgagaggcgcatcgccgaggaggaggctcggagaccgcgggtggagcgc
cgcagcgacagcgacgatgaaaatgggccaaagcccaacagtgacctggaggcggggaaa
tctctccccttcatctatggggacatccctccccccctggtgtccacccctctggaagac
atggaccccttctacagcaatcagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctctgaggagg
gtggctattagagttttagtacactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtcccttataaagatcctggccaggggcttctgt
gtggggaagttcactttcctgcgggacccgtggaactggctggatttcagtgttatcctc
atggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgcacgttcaga
gttttgcgagctttgaaaactatctcagtaataccaggcttgaaaaccatcgtcggcgca
ctgatccagtcggtaaagaagctgtcggacgtcatgatcctcaccgtgttctgcctgagc
gtcttcgccctcatcggcctgcagctcttcatgggcaacctgagacagaagtgcgtgcgc
atgccagtgagcagcaacagcagcaacgtcaccatcgacgacgagatgatgtacaacttc
accctgcagaacgccacggataactcgttcaactggacagagtacatgagcgacgagagt
aattactattacctccctggccgtagggatgctctgctctgtgggaacggcagtggcgcc
gggctctgtccagagggcttcacatgtatcaaagctggtcgtaatccagactacggctac
accagcttcgacaccttcagctgggccttcctctccctgttccgactcatgacccaggac
tactgggaaaacctctaccagcagactctgcgtgcagcaggaaaaccctacatgatcttc
ttcgtgctggtgatcttcctgggctccttttacctggtgaacctgatcctggccgtggtg
gccatggcgtacgacgagcagaaccaggcgaccatcgaggaggctcagcagaaggaggag
gagttccaggccatgctggagcagctgaagagacagcaggaggaggcacaggttgccgcg
gcagcagccacggagagcggagagtacagcgggagagggggccccacctcggagtcctcc
tcggggacgtctaagctcagctcaaagagtgccaaggagcgacgcaacaggcggaagaag
aggaagcagagggaggaggaagaggagaggggcgtccgagacaagttccacaagtccgag
tccgaggacagcatcaagagatccagcttccgcttctccatcgatgccaacagactttcc
tatgagaagagatgctcctcacccaaccagtctctcctcagtatccgtggctccctcttc
tcacctcggagaaacagtcgcgccagcctgttcagcttccgcggcagggcgcgcgacatg
ggctccgagaacgacttcgccgacgacgaacacagcaccttcgaggagagcgacagccgc
cggggctccctgttcttgccacgccgcctcgagcgccgctgcagcgccgtcagccagacc
agcctcggggcgccgcggatcgtgctgccagccaacggcaagatgcactgcgctgtggac
tgcaacggcgtggtgtcactggtcggtggaacttctgtaacaacctcccctgtaggtctc
ctgctgcctgaggggacgactacagataccgagctcaagaaacgccgctcaggttttcac
cagccgtccatggattacttagaagaaccaggaggcaggcagagagccatgagcgtggcc
agtatcctcaccaacaccatggaagaacttgaagagtcaagacagaaatgccccccctgc
tggtacagattcgccaacacctgtctgatctgggattgttgccccgcgtggctgaaaatc
aaggaggttgtcaacatggtggtcatggacccctttgtggatctggccatcactatttgc
atcgtcctcaacacccttttcatggccatggagcattaccccatgactaaagagtttgat
aacgtcctctcagttggaaacctggtgttcacgggcatcttcacagcagagatgtgcttc
aagatcatcgccctggatccctactactacttccaggagggttggaacatctttgacggc
atcattgtcagtctcagtctgatggagcttggcttggccaacgtagaaggcctgtcggtg
ctcaggtccttcagattgctgagggtcttcaaactggccaagtcgtggcccactttgaac
atgctgatcaagatcatcggtaactctgtgggtgctctggggaacctgactctggtgctg
gccatcatcgtcttcatcttcgccgtggtgggcatgcagctgtttggcaagagctacaag
gagtgcgtgtgtaagatttccgaggactgtcagctgcctcgctggcacatgcacgacttc
ttccactccttcctcattgtgttccgggtgctgtgcggagagtggatcgagaccatgtgg
gactgcatggaggtggctggacagagcatgtgcctgattgtcttcatgatggtcatggtc
attggaaacctggtggttctaaacctcttcctggctctccttctgagctcattcagcgct
gacaacctggcagcaaccgacgacgacagtgagatgaacaaccttcagattgcagtgggc
cggatccagcggggcattgcatttgtcaaaaccactgtacgccatttcctccagagcctc
tgcttcggtgggggcggtaagggctcgggtctggctgaggagagcaaacccctggatgaa
ctgcacagcaacggcaagggcaactgcatctccaaccacacatcagtggagatcactaaa
gatcccagtggggtgtacatgacagagggcaacggacggccaggtggagggctggtagtt
ggggtcgtggttggtggggacactacagagaagtaccccatggaggagtgtgactacatg
tcatttattcataaccccagcctgacagtcacggtgcctatcgctgtgggcgagtcggac
tttgagaatctgaacacagaagatttcagcagcgactcgtcggacgtggagggcagcaaa
gagaagctcgatgtagagccccagcgtctgagctcatcggaggggagcacagtcgatatt
cgccccccaggagatggggtggattcggtggagctggagccagaggagtcactggaccca
gaggcctgcttcactgagggctgcgtgcgcaggttccagtgctgccagatcaacgaggag
ggaccaaagtacaagagctggtggacactcaggaaaacctgctttatcatagtggagcac
aactggtttgaatccttcatcatattcatgatcctgctcagcagcggagcgctggcgttt
gaggacgtatacatcgagcagcggaggaccgtcaaaacagtgctggaatacgcagacaag
gtcttcacttacgtcttcatcctggaaatgctgctgaagtgggtggcatacggctttgtc
aagtacttcaccaacgcgtggtgctggctcgacttcctcattgtagacgtgtccctggtc
agcctggtagccaacgctctgggttactctgagctaagcgccatcaaatctctgaggaca
ctgcgagccctccggcccctgagggccctgtctcggtttgagggcatgagggttgtggtg
aacgcgctgctgggggccatcccctccatcatgaacgtactgttggtgtgcctcatcttc
tggctcatcttcagcatcatgggcgtcaacctgtttgcagggaagtactattactgcgtc
aacaccaccagtgacgagatcttccccatcgacatcgtcaacaacaagaccgactgcttg
aatctggtcaacgacagcgcccgctggaagaacgtcaaaatcaactttgacaatgtcgga
gcaggatatctggctctgttgcaagtggcaacatttaagggatggatggacatcatgtac
gcagccgtggactctcgaaacctggaagaccagccgaaatatgaagtgaacctgtacatg
tacctctactttgtcatcttcatcatcttcggctccttcttcaccctcaacctgttcatc
ggtgtcatcatcgacaacttcaaccagcagaagaagaagtttggaggtcaggacatcttc
atgacagaagaacagaagaaatactacaatgccatgaagaagctgggctccaagaaacca
caaaaaccgatacctcggccagcaaatgcatttcaaggctgcgtgttcgactgcatcaca
aagcaggccttcgacattgtgatcatgatcctcatctgccttaacatggtgaccatgatg
gtggagacggacgaccagacacctgacatggacaaaaccctctactggatcaacctggtg
ttcattgtgctcttcactggggagtgtgtgctgaagatgatctctctgcgtcactactac
tttaccattggttggaatatatttgactttgtggtggtgatcctgtccatcgtaggtatg
tttttatctgaagttatcgagaagtactttgtgtccccgacgctgttccgagtgatccga
ctggccaggataggccgcatcctccgccttatcaaaggtgccaaaggcatccggacgctt
ctctttgccttgatgatgtcactccccgccctgttcaacatcggtctcctcctcttcctg
gtcatgttcatctacgccatcttcggcatgtccaactttgcctacgtgaagcgcgaggca
ggaatcgatgacatgttcaattttgagaccttcgggaacagtatgatctgtttgtttcag
atcaccacctcaggtgggtgggacaccctgctggcgcccattctgaacaagcgggagccc
gactgcgacagtcaaatcgagcacccgggcaacaattacagaggcaactgcggcaaccca
tcagtagccatcttcttcttcgttagctacatcatcatctgcttcctcatcgtggtcaac
atgtacatcgccgtcatcctggaaaacttcagcgtggccacggaggagagcgccgagcca
ctgagcgaggacgactttgagatgttctacgaagtatgggagcgctttgatcccgacgcc
acgcagttcatggagtacagcaagctctctgactttgcagatgctctagatccaccactg
cgcatgcccaagcccaacatgatccagctcatctccatggacctgccaatggtgagcggc
gagcgcatccactgcctcgacatcctgttcgccttcaccaagcgagtgttgggcgaaggc
ggcgaaatggacgtgttacgcgggcagatggaggagcgcttcatggcgtctaacccctct
aaagtgtcttacgagcccatcaccaccaccctgcgccgcaaacaggaggacatgtcggcc
acaatcatccagagagccttccgccactacatgatccgcctggccatgaagaaggcctcc
gccctctacaaggagaagctgaaggagggaatccgcgaccccgacaaggacgtgatggtc
atcagcaagttcaccgagaactccacctcggacaaaacggacatgactccctccacggcc
tccccaccctcctacaacagtgtgaccaagtcagacaaggacaaatacgagaaggagaac
agggaaaaggaaaacaaagggaaagacttgaaagacagaaagaaatag
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