KEGG   Larimichthys crocea (large yellow croaker): 104935578
Entry
104935578         CDS       T04659                                 
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104935578 (edc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104935578 (edc4)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104935578 (edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104935578 (edc4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_EML_2 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 RMC1_N Beta-prop_WDR36-Utp21_2nd EIF3I PIN_8
Other DBs
NCBI-GeneID: 104935578
NCBI-ProteinID: XP_019113663
LinkDB
Position
XII:complement(3602941..3621970)
AA seq 1398 aa
MASNSNIDIEGATQHLRDILKLDRPGNGTDAQSSDGPRMPSFNGELNGLLGAAGLLGSTD
RTSMTDSSRPISTDMSSAQEPQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARGSN
KVKVQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFTERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQVVVHIRRPDDAPLNSHRRLIW
CPFIQDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPVDAADLKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPGLKASLDLS
AEYLILTDVQRKVLYVMELRQDLDKGKATFTAVSEFLVTHPVLSFGVRDVAHSRLRHTEV
LPAEEESESLTTEGAQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPHSGSSSAVFLPHSD
SQDGFAGFSDHLTDQSSDKESGNGSQTDLRKIPSLPAPTDFLTNSGAGGGAMPKLMTPDA
FMTPSTSVPASPGSSASSLTIVTAISSNSDSTNRTLDEVSQSPNRAENSGSSNTSLALST
STSSPRAASAVLLPGLENLQALASPSGPLALDSPQVLDSPLLPPLASPTRARSPDVISSA
STAMSQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNNSL
SLLPLELGGADGPVGGAAESEPRLSHTPSLLENALSQENPGVGGGSSDGGVSHTPWPAAP
DITRETRNSLRDNGLGDCSREESKDRHLSSPYHRRSYHLQQSDSQDAGGEQSDPDDEVAS
LASSTGNCGSRSSHRLPVKDWKTSPRGSPKLKRKTKKDDGESSQSRQTDSAQMNAEVQDE
LLMLLRSQQRELTELRGQIEAMQSSIMAQVEHVLTSHQEQEQRRLERVLAESQNHQQQLQ
EQLGQQLGHALGSALTNRMDKVLREEMKKTVPQTISKSLEPVTGQLNNTIAAKLTAVEVT
LKENVTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDS
FKQGTQEYIQQLDTHMKNRKQREQETRDPMIGQLQQMIDGFQSSTDQLANNITANVRAEV
QHQIQMMVGNLQESILSHVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPTAHLD
YQTQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHSCPLSQPVLLS
LIQQLSSNLSTRSELKISYLEDAVMNLDHGDPLTRDHMAAVLAQVRPKLFTFLQQDPHSP
LSKRARRLMMMLQGLVNH
NT seq 4197 nt   +upstreamnt  +downstreamnt
atggcgtccaactccaacatagacatcgagggtgcgacccagcatctccgggacatcctc
aagctcgaccggcccggcaacggcaccgacgcacagtcgagtgacggtccaaggatgccg
tcttttaacggagagctgaacggcttgctgggagccgccggcctcctgggcagcaccgac
cggacctccatgacggactccagcagaccgatctccacggacatgagcagcgcgcaggag
cctcagatcatctgcctctctggtgacgacggctccacctgcatccccatcacctccaac
aacgtggagatcgtggcaagtcaagattcaagcatcaacagcaaagctcgcggcagcaac
aaggtgaaggttcagccggttgccaagtacgactgggagcacaagtattattacggcagg
ctgatcgccgtgtccaactccttcctggcctacgccatcagaggagccaacaaccacgcg
atgatccgcgtcctgagcgtcgggttcacggagcgctcgctcctgaagggcttcaccgga
gccgtcacagacctggccttcgcccacctcgactcctccctgctgggctgcgtagatgaa
gctggaaacctgatggtgtggcagctcacctgcactggaagcaagatacttgatcaggtg
gtggttcacatccggcggcccgacgacgccccgctgaactcccaccgccgcctcatctgg
tgcccgttcatccaggacgacaacgaggagaaccaggacgacaccagccagacgttagct
ctcctccatgaagaccgggctgaggtgtgggacctggaagtcttgcgagccaacaacagc
agctggcccgtcgatgccgcggacctgaaagaaggcctcatcacggtgaagggacacact
cagcgagtcagcgaaggagctctgtctccggacgggacggtgttagccacagccagccat
gacggatacatcaagttctggcagatctacatcgaaggtggacaggacaagccgagatgt
cttcatgagctgcggcctcacggcggacgccccctctcctgccttctgttctgtgacaac
cacaagaggcaggacccggaggttcctttctggcggttcctgataaccggagcagatcag
aaccaggagttgaaaatgtggtgcactgtctcctggacctgtttgcagaccatcaggttt
tctccggatctgttcaactcctcggttctgccgggtctgaaggccagtctggatctctct
gcagagtatctcatcctcactgacgtacagaggaaggttctgtacgtgatggagctgcgg
caggacctggacaaaggcaaggccaccttcacggcagtgtcagagttcctggtcacccac
cccgtgctcagcttcggggtccgcgacgtcgctcacagccgactgcgacacaccgaggtc
ctgccggccgaggaggagagcgagagcctgacgacagagggtgctcaaggtcccaccgag
tccaagtctgggatccaaattaaactctactgcgtccacaccaagagtctgcaggacgtt
cagatctggtttcagcctcactctggttccagctctgccgtgttcctgccacactcggac
tctcaggatggttttgcagggttttcggatcatctcaccgaccagagctccgacaaagaa
tcaggaaacggctcccagaccgacctgaggaagatcccgtcgcttcccgctcccaccgac
ttcctgacaaactcgggtgccggcggcggggcgatgcccaagctgatgactcccgacgcc
ttcatgacgccgagcacttcggttccggcttctcccggcagcagcgccagcagtctgacc
atcgtcacggcgatcagcagcaactcggactccacaaacagaactctggacgaggtcagt
cagagtccaaaccgagccgagaacagcggcagcagcaacaccagcctggcactgtccacc
tccaccagcagcccgagagctgcctctgctgtgctgctgcccgggctggagaacctccag
gctttagcgtcccctagtggtcctctggcgctggacagccctcaggttctggattctccc
ctcctgccgccgctggcctcgccgaccagagcccgctcccccgacgtcatctcctcggcc
tccacggccatgtcccaggacatgccggagatcgcgtcccagacgctgcagctgcagcgc
gggctggtgtccagcttggagcctttacctctgtccgctctgcagacggacagcatggcc
tcggcggcgtccgccctgcacctgctcacctcgccgcgcacggccaacaacaacagtctc
agcctgctgccgctcgaactcgggggcgccgacgggccggtgggcggagcggcagagtcg
gagcccagactcagtcacaccccgtctctgctggagaacgccttatcgcaggagaacccc
ggcgtcggaggaggctcgtcagacggcggcgttagccacacaccgtggccggcggcgccc
gacatcactcgagaaacgaggaacagtctcagggacaacggtcttggagactgttcaaga
gaggagtcgaaggacagacacttgagctctccttaccatcgacgctcctatcacctgcag
cagagtgacagccaggacgccggcggagagcagagcgaccccgacgacgaggtggccagc
ctggcgtcgtccacggggaactgcggctctcgctcttctcacagacttcccgtcaaggac
tggaagacgtcaccgcgaggctcgccaaaactaaagaggaagaccaagaaagatgacggt
gaatcgtctcagtccaggcaaacagactctgctcagatgaatgcagaagtccaggacgag
ctgctgatgctcctgcgcagccagcagagggagttaaccgaactgcgtggacagatcgaa
gccatgcagagctccatcatggctcaggtggagcacgtcctgaccagccaccaggagcaa
gaacagcgccgcctggagcgagtcctggccgagagtcagaaccaccagcagcagctccag
gagcagctcggccagcagctcggccacgccctcggctcggcgctcaccaacaggatggac
aaagtgctgcgagaggagatgaagaagacggtgccgcaaacgatctccaagagtctggag
ccggtgacgggtcagctgaacaacaccatcgccgccaagctgacggccgtggaggtcacc
ctgaaggagaacgtcaccaaggtggtcaaatcaaagaacacgacggacgccatcgggcga
gcggcggccgaagcgatgcaggggccgatccaggcggcgtacaaagacgccttccagagc
atcgtgctgccggtgttcgagaggggctgccagtccatgttccagcagatcaacgacagc
ttcaagcagggcacgcaagagtacatccagcagctggacactcacatgaagaacaggaag
cagagggagcaggagacacgcgaccccatgatcggccagctccagcagatgatcgacggc
ttccaaagctccaccgatcagctggccaataacatcacggctaacgtccgggcggaggtc
cagcaccagatccagatgatggtgggaaatttgcaggagtctattcttagccacgtgcag
cggatcgtcaaaggcgaggtgagcctggcgatgaaggagcagcaggcggcggtcacctcc
agcatcatgcaggcgatgaggtcggcggccggcacgcccgtccccacggcgcacctcgac
taccagacgcagcaggccaacatcctgcagctgctgcagcagggccagctcaaccaggcc
ttccagcaggctctgtcagcgaccgacctgaacctggtcctgtacgtgtgcgagaccatc
gactcccagcaggtgttcgggcagcactcgtgtcctctgagccagcccgtgctgctgtcg
ctcatccagcagctcagctccaacctcagcacccgctcggagctcaagatcagctacctg
gaggacgccgtgatgaatctggaccacggcgacccgctgacgagagaccacatggccgcc
gtgctggcccaggtccggccgaagctgttcaccttcctgcagcaggacccgcacagcccg
ctcagcaagagggcgcggcgcctgatgatgatgctgcagggcctcgtcaaccactaa

DBGET integrated database retrieval system