Larimichthys crocea (large yellow croaker): 104936050
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Entry
104936050 CDS
T04659
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104936050 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104936050 (cnot1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104936050 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104936050 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104936050
NCBI-ProteinID:
XP_010750310
LinkDB
All DBs
Position
XXI:complement(8934364..8959165)
Genome browser
AA seq
2388 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMGSL
NLGSTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTAFGGIGSLSSQLPGMD
SGPLGSGIGSGIGSSLGMQTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAHV
QAQSQQPGGPKVPQPGQPSTLVTTTTTTTTATKTTTITRPTTSSFKKDVPPSINTTNIDT
LLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMK
RVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGH
WLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNP
WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSLEEQLS
APKKEAKPPEEMLPVSTTGDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALAG
LAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFA
LDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME
EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQ
AERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDV
AQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEG
LLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTI
ETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGL
REKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVE
ISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLG
IVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRP
TKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPM
QILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTP
NLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGN
RYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLN
AIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIE
LIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaattaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccattgacaatcctctgcac
taccagaagagtttgaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggcctcgctttgctcaactccagcaacgcagac
cttcgtggttttgccgcgcagttcatcaagcagaagcttccagacctcctgcggtcatac
gttgacgcggatctcggaggaaaccaggaaggtggcttccaggacattgccatagaggtc
ttgcacctgctgctctcccatctactgtttggccagaagggagccagtggggttgggcaa
gagcagattgacgccttcctgaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctacggcttctgtgccagtctggacgagtgcagaaacataatcctgcagtat
ggggtgagagaggtgacggccagccaggtagccagggtcctgggcatgatggcacggacc
cactctggcttaactgatggcatcccactacagtccatctctgctccgggaagcggcatc
tggagcgacggtaaggacaagaacgacggctcgcaggcgcacacgtggaatgttgaagtt
ctcatcgatgttgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacttacgaa
ctggaccacccgggcttcataatccgggacagcaaaggcctgcatatcgtggtgtacggc
attcagagggggttgggcatggaggtcttcccagtcgatcttatttatcggccctggaaa
cacgctgagggacagttgtcattcattcagcactccctgatgagcccagaagtgttttgc
tttgctgactacccttgccacaccgtggccatcgacatcctcaaggccccaccggaggat
gacaacagagagattgccacctggaaaagtctggacctggtggagagtctgcttcggctg
tctgaggtgggccagtatgagcaggtgaagcagctgtttggtttcccaatcaaacactgc
ccagacatgttggtgctggcattgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctcatgcccatcttcctgggcaaccacccgaactctgccattatc
ctgcactacgcgtggcacggacagggacagtctccctccatccgtcagctaattatgcat
tcaatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggctcaggacttgaagtctctatcgatgttgctgaatggtactccatttgcc
tttgttattgacctcgctgcacttgcttcccgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcatgcgtgacattcctg
aagaggcgctgtccatccattatgggtggcctggctccagacaaggaccagcccaaaagc
gcccagctgcccccagagaccttagccacgatgctggcctgtctgcagtcctgtgctggg
agtgtttcacaggagctgtcagaaaccatcctgactatggtcgccaactgcagcaatgta
atgaataaagcccggcagccaccaccaggggtaatgccaaaaggacgtgccccgagcacc
agcagcctagacgccatctctcctgtacagatggatcctctgtccggcatgggttccttg
aacctggggagcacagccacctcacacactcaaagcatgcagggtttcccaacctcactg
agttcagctttcagtaatccccaatccccagcaaaggctttcccaccactgtccaaccct
aaccccagcacagcatttgggggcattggcagcctgtcctcgcagctccctggtatggac
tctggtcccttgggctcgggcatcggctctggtattggctccagtctggggatgcaaacg
gtgaacacggatcctttcggcaccaggaagatgagcacaccgggcctgaacccaccgacc
tttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcactttagtaaggag
atagacgacgaggcgaacagttacttccagcgcatctacaaccacccacctcacccgact
atgtctgtggatgaagtactggagatgctgcagaggttcaaggattcaaccatcaagcgg
gagcgcgaggtgttcaactgtatgcttcggaacttgttcgaggagtaccgattcttcccc
cagtacccggacaaggagctgcacatcactgcctgcctcttcggcggcattatcgagaag
ggcctcgtcacctacatggccctgggcttggccctccgatatgttctcgaagccttaagg
aaaccatacggatccaaaatgtattactttggaattgctgccctagataggtttaaaaac
agactaaaggactaccctcaatattgtcaacacctggcttcaattgcccacttcttgcaa
tttccccaccatttacaagagtgcgtgcagtatatcgagtatggccaacagtcacgggac
cctccggtgaagatgcagggctccatcaccacccctggcagtctggcgctggcacacgtc
caagcccaatcccagcaacccggaggccccaaggtcccgcagccaggtcagcccagcact
ctggtcaccaccacgactactacgaccaccgcaaccaagaccaccaccatcacaagacct
acaaccagcagcttcaagaaggatgtccccccctccatcaacacaaccaacatcgacacc
ctgctggtggccaccgatcaaacagaaaggattgtagagcctccagagaatgtccaggag
aagattgcgttcatcttcaacaacctttctcagtccaacatgacgcagaaggttgaggag
ttgaaggagacggtgaaggaggagttcatgccctgggtgtctcagtacctggtgatgaag
cgtgtcagcattgagcccaacttccacagcctctattccaactttctggatacactcaag
aacccagagtttgtcaagatggtcctcactgagacgtacaggaatatcaaggttctcttg
acttctgacaaggcagctgccaacttctctgatcgctccctgctgaagaatctgggccac
tggttgggcatgataacactggccaaaaacaagccgatcctttacacagatctggaagtc
aaatctctgctactagaggcgtatgtgaaaggccagcaggagcttctgtacgtggttccc
ttcgtggccaaagttttggagtccagtttacgaagcatggtcttcaggccccagaacccc
tggaccatggccatcatgaatgttctcgctgagctgcatcaggaacatgacctcaagctg
aacctgaagtttgagatcgaagttctgtgtaagaacttgtccctggacatcaacgacctg
aagccaggaaacttgctgaaggacaaggagaagctcaagagcctggaggagcagctgtct
gcaccaaagaaagaggcgaagcctcctgaagagatgctgccggtttctacgacaggagac
tttgttccatttgcagctcctccctccaccccggctgctaccaccaccacttgcacaacc
actgggccccccaccccacagttcagttaccacgacattaacgtgtatgccctggcaggc
ctggctccacacattaacatcaatgtcaacatccctctgctacaagcccatccacagctg
aagcagtgtgtacggcagtcagtggagcgagccgtccaggagctcgtgcacccggtcgtt
gaccgctccatcaaaattgccatgacgacctgtgagcagatcatcaggaaggacttcgcc
ctggattcggaggaatcccgcatgcgcgtggccgcccaccacatgatgagaaacctgacc
gccggcatggccatgatcacctgccgcgagccgctgctcatgagcatcgccaccaacctc
aagaacagcttcgctgctgcgcttagggcaccaacaccccaacagagggagatgatggaa
gaggctgcagctcggatcgctcaagacaactgtgaactggcttgttgcttcattcagaaa
acagccgtggagaaggctggtccagaaatggacaagagactagccacggagtttgagctg
aggaagcacgcacgccaagaaggacgtcgttattgcgatcccgtcgtcctgacctaccag
gctgagcgtatgcctgagcagatcagactcaaggtgggaggagtggaccccaagcaactg
gctgtgtacgaggagtttgccaggaacgttccaggtttcttacccagtaatgatctctca
cagcccactggcttcttggcccaacccatgaagcaacaggcatgggccacagacgacgtg
gctcagatctacgataagtgcatggcagacctggagcagcaccttcacgccatccctccg
gccctcgccatgaacccgctgacccaggctctgcgcagcctgctcgaagctgtggccttg
gctagaaactccagagacggcatcgccgcactcggcctcctgcagaaggctgtggaaggt
cttctggatgctaccagcggggctgatgcagacttgctgctccgctacagagagtgccac
ctgctggtgcttaaagctctgcaggatggacgtgcctatggaccacagtggtgcaataag
cagatcaccaggtgtctgatcgaatgtcgcgatgagtacaaatacaacgtggaggcagtg
gagcttctgatcaggaaccacctggtgaacatgcagcagtatgacctgcacctggcacag
tcgatggagaacggcctgcactacatggcggttgccttcgccatgcagttggtgaagctg
ctgctggtggatgagcgcagcgtcagccacgtcacagaggccgacctcttccacacaatc
gagactttgatgaggacctgtgcacactccagagccaacgcacccgagggtcttccacag
ctgatggatgtcgtccgctccaactacgaagccatgattgaccgggcccacggcggaccc
aacttcatgatgcactctgggatttcacaggcttcagaatatgacgatcctccgggcctg
agggagaaggcggagtacctgctgagggaatgggtcaacctgtatcactcagctgctgct
ggcagggatagcaccaaagctttctctgcctttgtcggccagatgcaccagcagggcatc
ctgaagaccgatgacctgatcacgaggttcttccggctgtgcacagaaatgtgcgtggag
ataagttaccgggcgcaggcggagcagcagcacaacccggcagccagcgcagccatcatc
agagccaagtgttaccacaacctggacgccttcgttcggctcatagccctgctggtcaaa
cactccggagaggccaccaacacagtgacgaaaatcaacctcctcaacaaggtgctgggt
atcgtagttggggtgttgatccaggaccacgacgtccgtcagacagaatttcaacagctg
ccataccaccgcattttcatcatgctgctgttggagctcaacgcccccgaacacgtcctg
gagaccatcaacttccagacgctcacagccttctgcaataccttccacatcctgagaccc
accaaagcacccggctttgtgtacgcctggctggagctcatctcccatcgcatcttcatc
gccaggatgctcgcacacacgccgcagcagaagggctggcccatgtacgcacagctgctg
attgatctcttcaagtacctggccccgttcctgaggaatgtagagctcaacaaacctatg
caaatcctctacaagggcacgctgcgagtgctcctggtcctgctgcatgacttcccagag
ttcctgtgtgattaccattacggcttctgcgacgttatcccgcctaactgcatccagctc
cgcaacctcatcctcagtgccttcccacgcaacatgaggctccctgacccgttcacgccc
aacctgaaggtggacatgctgagcgagatcaacatcgctccgcgtatcctcaccaacttc
acaggcgtcatgccttcccagttcaagaaggatctggactcgtacctgaagacccgttca
ccagtcaccttcttgtctgagctgcgcagcaacctgcaggtgtccaatgagccaggaaac
cgctacaacatccagctgatcaacgctctggtgctgtacgtaggcacgcaggccatcgct
cacatccacaacaagggcagcaccccttcaatgagcactatcacccactctgcacacatg
gacatcttccagaacctggctgtggacctggacactgaggggcgttacctgttcttgaac
gcgatcgccaatcagctgcgctacccgaacagccacactcactacttcagctgcaccatg
ctctatctgttcgccgaggcaaacaccgaggccatccaggagcagatcaccagggttctg
ttggagagactgatcgtgaacaggcctcacccgtggggtctcctcatcaccttcatcgag
ctgatcaagaatcctgccttcaagttctggagccacgactttgtgcactgtgcccccgag
attgaaaagctgttccagtcggtcgctcagtgctgcatgggacagaagcaggcccagcag
gtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
