Larimichthys crocea (large yellow croaker): 109142385
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Entry
109142385 CDS
T04659
Name
(RefSeq) zinc finger BED domain-containing protein 1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
109142385
04121 Ubiquitin system [BR:
lco04121
]
109142385
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
109142385
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
109142385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-BED
Dimer_Tnp_hAT
zf-C2H2_12
Motif
Other DBs
NCBI-GeneID:
109142385
NCBI-ProteinID:
XP_019131547
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Position
III:26344987..26347571
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AA seq
685 aa
AA seq
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MKRVRRRRSSVWDCFEQVGNFVRCMRCDATLKYCGGATSSMMNHMSRHHPSSSTAPPPPP
LLLDEDEKPVICAEEDSSASSDIMQVAVMSPNVNANQQPERDYGERKRLKRSSVWDIFIK
VDDEVHCTMCDTKLKYRSSTTSMMYHIKNKHPDTMPNDGVSLATHAEVTELITRMIEKDM
LPVTMVTGDGFRELLAYTVHSYKMPSAGDITRLIEGHFHEKVEELVVQLGRVEKVALTAD
FWTALPFQRYITVFCSFITEDWQGKSAVLQTHKLSSDSHVTTDGVTEMLLSTVQTWGIAG
KVTACVHNSTQDVLPANARTRVTWDYAACFATTLQLAVSDGLSEDLTRIIVAAGKLVKHF
GHSLLASEALEQKQVQMCLPQHKLVQSSKARWDTICDMFERLLEQRWAIKAVLSDRTITN
RQEAQTLEIEDDCWQIIENFTPVLATLKWATTVISAETEVSISNIYPITFSLIQTHLVPK
ENDVDQVSEFKLKVQKSLRNHMEVDSNDLASKPALIASMLDPRHKHLSFLTPTGRLAAKV
KLHELVSKLDVITTTVGPKDEQQETLITPDISQVAMPSQVRSDTKNTMMLLLGDNYSSSY
ATDSEAQVDYYLRDIAPSLDINPLDWWRVNGPRFPKLATLARHYLCVPGVSLPSLLSETG
QTFATMRTRLSPEHVDMMIFVNRNV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcgtgcggaggagacgcagctcggtgtgggattgtttcgagcaggtgggaaac
ttcgtccgctgcatgcgatgtgacgccacgctcaagtactgcggcggagccaccagctcc
atgatgaaccacatgagcaggcaccacccgtcctcgtccacggcgccgcctccgccgccg
ctgctgctggacgaggacgagaagccggtgatctgtgccgaggaggacagcagcgccagc
tcggacatcatgcaggtcgctgtgatgtctcccaacgtgaacgccaaccagcagcccgag
cgggactacggagagaggaagcggctcaagaggagctccgtgtgggacatcttcatcaaa
gtggacgacgaggtccactgcaccatgtgtgacaccaagctcaaatacaggagcagcacc
accagcatgatgtaccacatcaagaacaagcacccggacaccatgcccaatgacggcgtg
tcactggcgacccacgcggaggtcactgaactcatcaccaggatgatagagaaagacatg
ctccccgtcaccatggtgaccggggatggtttccgggagctgctcgcatacaccgtgcac
agttacaaaatgccatccgcgggcgacatcacacgccttatcgaaggccacttccacgag
aaggtggaggagctcgtggtgcagctggggagggtggagaaggtggctctcaccgccgat
ttctggacagccctcccgtttcagaggtacatcacggttttctgttcgttcataacagag
gactggcaggggaagtcggccgtgctgcagacgcataagctgtcatcggacagccacgtt
actacagacggagtcacggagatgctcctcagtaccgtgcagacctggggcatcgctggg
aaggtgaccgcgtgtgttcataacagcacgcaggacgtcctgccggccaacgcgcgcacc
cgcgtcacctgggactacgccgcatgcttcgccaccacgttgcagctggcagtcagcgac
gggctgagcgaggatctgacccgcatcatcgttgccgcggggaaactggtcaagcacttc
ggtcacagcttgctggcgagcgaggcgttggagcagaagcaggttcagatgtgcctgccc
cagcacaagctcgtccagtcgagcaaagccagatgggacacgatctgcgatatgttcgag
cggctgctcgaacagcggtgggcgattaaagccgtcctctcggatcgcaccatcaccaac
aggcaggaggcgcagaccctcgagatcgaagacgactgctggcagataatcgagaatttc
acacccgtgctggcgacgctgaaatgggcgacgacggtcatatccgctgagacggaggtg
tccatttcaaacatctaccccatcacgttcagcctcattcagacccaccttgtgccaaaa
gagaatgatgtcgaccaagtctctgagttcaagctcaaagtccagaagtcgcttagaaat
cacatggaggttgactcgaatgacctggcctccaaaccggctctgatcgcctccatgctg
gaccctcgtcacaaacatctcagcttcctgacaccaacggggagactggctgctaaggtc
aaactgcatgagctggtttcaaaattagatgtgataactactactgtgggcccaaaggat
gaacagcaggagaccctgatcacacccgatattagccaagtggccatgccctcgcaagtg
agaagcgacaccaaaaacaccatgatgctgctcctgggcgacaactacagttcctcctat
gccacggactctgaggcacaggtagattactacctgagagacattgctccctcgttggac
ataaaccctcttgactggtggagggtaaacggaccgagattccccaaactggccactctg
gcgagacactatttgtgcgtacctggggtatcgctgccgtctttgttgtcggagaccgga
caaacatttgccacaatgcgcacaaggctgagcccggagcatgttgacatgatgatcttt
gtaaacagaaatgtgtaa
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