Lacticaseibacillus paracasei BD-II: LCBD_3147
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Entry
LCBD_3147 CDS
T01955
Symbol
trmE
Name
(GenBank) TRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
lcs
Lacticaseibacillus paracasei BD-II
Brite
KEGG Orthology (KO) [BR:
lcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcs03016
]
LCBD_3147 (trmE)
Transfer RNA biogenesis [BR:
lcs03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
LCBD_3147 (trmE)
Prokaryotic type
Methyltransferases
LCBD_3147 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
AIG1
RsgA_GTPase
GTP_EFTU
Ras
Roc
cobW
AAA_22
Wtap
Motif
Other DBs
NCBI-ProteinID:
AEA58636
UniProt:
A0A806EGY0
LinkDB
All DBs
Position
complement(3064780..3066168)
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AA seq
462 aa
AA seq
DB search
MSASITAYDTIAAISTPPGEGAISIVRLSGETAVATANQVFKGKDLSQVKSHTIHYGHIV
DPESGELIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARMAEPGEFT
KRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILEVLAQVEV
NIDYPEYDTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRPNVGKSSL
LNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQA
ITQADLILLVLDQSEPLTDEDEQLIQATANKKRIIVLNKQDLPAQLDTTALLKLVSPDEI
IKTAIPTSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLLRQANKSLDAVIAGIHA
GMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatctatcactgcgtacgacaccatcgctgccatctccaccccgcctggcgaa
ggtgctatcagcatcgttcggctcagcggtgagacagccgtagcgacagctaatcaagtt
ttcaagggaaaagacctctcgcaggttaaaagccatacgattcattatggccatattgtc
gaccctgaaagcggcgagttgattgatgaggtcatggttagtgtcatgttggcacctaag
acctttacccgtgaagatgttgtcgagattaattgtcatggcggtattgttgccactaac
cgcattttgcagttgctcttaggcgaaggcgcacggatggctgagccaggtgagttcacc
aaacgggcattcctgaacggccgcattgatctcacagaagctgagtcggtcatggatctg
attcgagccaaaaccgatcgggcgatgcaggtggcagtcaatcagctagacggtaatctg
catacattgatcaagcgccttcgtcaggaaatcctcgaagtgttggcacaggtggaagtc
aacattgactatcctgagtatgatactgatgaaatgaccaccaaaatgctgcttgaaaag
gcgcaaaccgttcaaaaagctatcagcaatttgctgagtaccgccagtcaaggcaaggtc
ttgcgcgaaggtttagccaccgcaattgttggccgtcccaacgttgggaagagttcgctg
ttaaatcacatgttgcatgaggataaagcgattgtgaccgatgtagctggtacgactcgt
gatgtgctagaggagtatgtcaacgtgcgtggtgtcccgctaaaactggtcgacacagcc
ggtattcatgacacgactgacaaagtcgagaaaatcggtgttgaacgctcacgtcaagcc
atcacacaagccgatttgattttgctagtgttggatcaaagtgaaccattgacggatgaa
gacgaacagctcattcaagcaacagctaataaaaaacggattatcgttttgaataaacag
gacttacctgcacagctagataccactgccttgttgaagttggtttcgccggatgaaatc
atcaagaccgctatcccgactagcgcaggcatggatgccttagacgaacggattgcgaag
ttgttcttcggcggcatcgaaaatagccaaacaacagtgatggtttccaacgctcggcag
atcgggctattacgccaagccaacaagagcttggacgctgtgatcgccggaatccatgct
ggtatgccaattgatctcgtgcaaatcgacatgactgcggcatgggataaacttggtgaa
attactggtgaaagtgcgccagatgaactaatcacccaattgtttagtcaattctgcttg
ggcaagtaa
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