Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842: Ldb0386
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Entry
Ldb0386 CDS
T00364
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ldb
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Pathway
ldb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ldb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ldb0386 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldb03021
]
Ldb0386 (rpoB)
03400 DNA repair and recombination proteins [BR:
ldb03400
]
Ldb0386 (rpoB)
Enzymes [BR:
ldb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ldb0386 (rpoB)
Transcription machinery [BR:
ldb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ldb0386 (rpoB)
DNA repair and recombination proteins [BR:
ldb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ldb0386 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CAI97221
UniProt:
Q1GBM5
LinkDB
All DBs
Position
334519..338184
Genome browser
AA seq
1221 aa
AA seq
DB search
MLNGHVVNYGQHRTRRSFSRIKEILPLPNLTDVQTESYKWFLDEGVKEVFDDILPISDTS
GRLTLEYVDYKLQEPKYTVDESRKHDATYSAPMHVTLKLTNHETGEIKTQDVFFGDLPLM
TKSGSFIVNGAERVIVSQLVRSPGVYYSGEFDKNGRQIFGTTVIPNRGAWLEFETDAKNI
SYVRVDRTRKLPLSVLVRALGFGSDSEIKEIFGDSDTLDLTLDKDVHKNPADSRVAEALK
DIYDRLRPGEPKTTDSSRSLLVSRFFDPRRYDLAAVGRYKVNKKLSLKNRLLGYTLAETL
ADPGTGEVLAAKGTVVNNEVMDVLKDYLDRDDFKTVTYTPSDEGVIPEPVTVQEIKVFSR
EIPDREIKLISNGHIAEDVKCITPADIIASVNYFLELQEGVGNIDDIDHLGNRRIRRVGE
LLQNQMRIGLARMERVVRERMSIQDAATVTPQQLINIRPIVGSIKEFFGSSQLSQFMDQN
NPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSMATY
AIINKYGFLETPYRRVSWATHKVTDKIDYLTADEEDNYIIAGANTPLNEDGSFVDDVILC
RHREDNVEVSPDRIDYIDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLINPH
GPLVATGMEYRAGHDSGDALLAEADGEVEYVDANEIRVRREDQTLDTYTLEKYRRSNATK
NYNQTPNVKRGDKVVDGQVIANGPSMADGELALGQNPVIAFTTWNMYNFEDAIMLSERLV
KEDVYTSIHIEDYDSEARDTKLGPEEITREIPNVGEDALKDLDENGIIRIGAEVHDGDIL
VGKVTPKGITELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQDVQVFTREAGDELA
PGVNTLVRVYIVQKRKIQVGDKMSGRHGNKGTVALIAPVEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLEIHLGRAARALGIHVATPVFDGASEDDVWDFVREAGVDSDGKTVLYDGRT
GEPFHNRVSVGVMYYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERITKPGVPESFRVLVKELQSLGLDL
RVLDSDENEVELRDMDEDSNEHVNIDALSRLAEAQEKKKLAEEEAEIAAEAEAEGSAEGD
AAEADADANEAETADDDKASK
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaacggacacgtagtaaattacggacaacaccggacaagacgcagcttctcacgg
attaaggaaatcctgccgctgccaaacttgaccgacgtacagactgaatcatacaagtgg
ttccttgacgaaggcgttaaggaagttttcgacgacattctgccaatcagcgacacttct
ggccgcctgactctggaatacgtcgactacaagctgcaagaacctaagtatactgtcgat
gaatcacgcaagcacgacgcgacttactccgctccaatgcacgtgactctgaagctgacc
aaccacgaaactggcgaaatcaagacccaagacgtcttcttcggcgacttgccgctgatg
accaagtccggctccttcatcgttaacggggcggaaagagttatcgtttcccagttggtt
agatcacctggtgtctactacagtggcgaattcgacaagaacggccggcaaatcttcggc
acgactgtcatccctaaccgcggggcttggctggaattcgaaactgacgccaagaacatt
tcctacgtccgggttgaccggacccggaagcttcctttatctgtcctggtccgggccctg
ggctttggctctgacagcgaaatcaaggaaatcttcggcgacagcgacactttggacctg
actttggacaaggatgttcacaagaacccagcagacagccgggtagcagaagccttgaag
gacatctacgaccgcctgcgtccaggtgaaccaaagactaccgactcatcccggagcctc
ctggtttcccgcttctttgacccacgccgttacgacctggctgctgttggccgctacaag
gtcaacaagaagctgagcttgaagaaccggcttttgggctacactttggctgaaaccctg
gctgaccctggcactggagaagttctggctgccaaggggacggttgtcaacaacgaagtc
atggacgttctgaaggactacctggaccgcgacgacttcaagactgttacctacacccca
tctgatgaaggtgtaatcccagaacctgtaactgttcaggaaatcaaggtcttctcccgt
gaaattcctgaccgggaaatcaagctgatctccaacggacacattgctgaagatgttaag
tgcatcactccagccgacatcatcgcttctgtcaactacttcctagaactccaagaaggc
gtcggcaacatcgacgacatcgaccacttgggtaaccgtcgcattcgccgggttggtgaa
ttgctgcaaaaccagatgcggatcggtttggcccggatggaacgggttgtccgcgaacgt
atgtcaattcaagacgcggctacggttactccgcagcaattgatcaacatccggccaatc
gttggttcaatcaaggaattcttcggttcatcccagctttcccaattcatggaccaaaac
aacccgctgggtgaattgacccacaagcggcgtatgtccgccttggggcctggcggtctg
tcccgtgaccgggccggctacgaagtccgggacgttcactacacccactacggccgtctg
tgcccaatcgaaacgccagaaggccctaacatcggtttgatcaactccatggccacttac
gccatcatcaacaagtacggcttcctggaaaccccataccggcgcgtttcctgggcaacc
cacaaggttaccgacaagatcgactacttgactgccgatgaagaagacaactacatcatc
gccggggccaatactcctttgaacgaagacggctccttcgttgatgacgtgatcctttgc
cggcaccgggaagacaacgtcgaagtaagtccagaccggatcgactacatagacgttatt
ccaaagcaggttgtttccgtaacttccgcatgtattccattcctggaaaacgacgactcc
aaccgggccttgatgggggccaaccaccaacgtcaggctgttcctttgatcaacccgcac
ggtccgcttgtggctactggtatggaataccgggcaggtcacgactccggtgacgccttg
ctggctgaagcagacggtgaagttgaatacgtggacgcaaacgaaatccgcgtccgccgc
gaagaccagacactggacacttacacccttgaaaagtaccgccggtcaaacgcgactaag
aactacaaccagacgccaaacgtcaagcgcggcgacaaggttgttgacggccaggtaatt
gccaacggtccgtcaatggctgatggcgaacttgccctgggtcaaaacccggttatcgcc
ttcaccacttggaacatgtacaacttcgaagacgccatcatgctgagcgaacgcctggtt
aaggaagacgtctacacttcaatccacattgaagactacgactcagaagcccgtgacacc
aagctggggccggaagaaattacccgggaaatccctaacgttggtgaagacgccttgaag
gacctggacgaaaacgggatcatccggatcggtgccgaagttcacgacggcgacatcctg
gtcggcaaggttacccctaaggggataactgaactgagcgctgaagaaagactgctgcac
gccatctttggtgaaaaggcccgtgaagtccgtgatacttcattgagggtacctcacggc
ggtggcggtgtggttcaagacgttcaagtcttcacccgtgaagccggcgacgaactggca
ccaggcgttaacaccctggtccgggtttacatcgtacagaagagaaagatccaagtcggg
gacaagatgtccggtcgtcacggtaacaagggtacggttgccctgattgctccagttgaa
gacatgccttacctgccagacggtactccagtcgacatctgcttgaacccaatgggtgtg
ccatcacgtatgaacatcgggcagctgcttgaaatccacttgggccgggcagcccgggcc
ttgggtatccacgtggctactccggtattcgacggggccagcgaagacgacgtttgggac
tttgtccgcgaagccggcgttgactcagacggtaagactgtcctttacgacggccggacc
ggtgaaccattccacaaccgggtttcagtcggggttatgtactacctaaagctgactcac
atggttgacgacaagatccacgcgcggtcaatcgggccttactcacttgttacccaacag
cctttgggtggtaaggcgcaattcggtggccagcgtttcggtgaaatggaagtctgggct
ttggaagcctacggtgcagcctacaccctgcaagaaatcctgacctacaagtctgacgac
gttgtcggccgtgtcaaggcctacgaagcaatcgtcaagggcgaaagaattactaagcca
ggcgtgcctgaatcattccgcgttttggtcaaggaactgcaatcattgggtctggacctg
cgcgttttggatagcgacgaaaacgaagttgaactgcgcgacatggacgaagactcaaat
gaacatgtaaacatcgatgctttatctcgccttgcggaagcgcaagaaaagaagaagttg
gccgaagaagaggccgaaatcgccgcggaagctgaagcagaaggcagcgcggaaggagac
gcagctgaagcagatgctgatgcaaatgaagctgaaactgctgacgacgacaaggcttca
aagtaa
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integrated database retrieval system
