Lactobacillus delbrueckii subsp. bulgaricus 2038: LBU_0504
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Entry
LBU_0504 CDS
T01957
Name
(GenBank) HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ldl
Lactobacillus delbrueckii subsp. bulgaricus 2038
Pathway
ldl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBU_0504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldl03019
]
LBU_0504
Messenger RNA biogenesis [BR:
ldl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBU_0504
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
ZapG-like
DUF3149
Motif
Other DBs
NCBI-ProteinID:
ADY84689
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Position
502071..503714
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AA seq
547 aa
AA seq
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MMNNTVFPLATVAVIFLISLVVGCLIGYAIRKNVWETRAENARQSVEAILAKAKAEVEVA
KAEIQAQKQAAEAVKRDAETEKKAKILEAQEEIRDYRQKVEDELNRRRDEAARKENRLQQ
KEDTLDHRSSLLDDREKQLTQRKAQIKQQEEKVAGLLEEAHGLVEKQNDKLLEISRLDEE
EAKKIVLAQVSDHLTKEKAELIRANEEEISARADRFAHQIIVDAIQSSAADTVAETTVSV
VDLPNDDMKGRIIGREGRNIRSFEAMTGVDLIIDDTPNTVTLSGFDSIRREVAKRALQKL
IKDGRIHPARIEEMVDKARKEVNDDIYEAGESALMELGIHRMNPELVKILGRLKYRTSYG
QNVLAHSIEVGKLAGTMAAELGLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKY
HEPDLVVNAIAAHHGDVPKLSFIADLVVAADTISSARPGARSESLENYIRRLTELEDIAG
SYDGVKQAYAIQAGREVRVMVEPGKISDDEITVLAHEIRDRVEKELDYPGNIKITVIREK
RAVAVAK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatactgtatttcctctcgcaacagtcgctgtaatttttcttatttcactt
gtcgtgggatgcctgattggttatgccatccggaagaatgtctgggaaaccagggcggaa
aacgcccggcagagcgtggaggcaattttggccaaggcgaaagccgaagtcgaagtagcc
aaggccgagatccaggcgcagaagcaggccgctgaagccgttaagcgggatgctgagacg
gagaagaaggccaagatcctggaagcccaggaagaaatcagggattaccggcagaaggtt
gaagacgagctgaacaggcgccgcgatgaagcggcccgcaaggaaaaccgccttcagcag
aaagaagataccctggatcaccgcagcagcctgctcgatgaccgggagaaacaactcaca
caaaggaaagcccaaatcaaacagcaggaagaaaaagtcgctggtttgctggaagaagcg
cacgggctggtcgagaagcagaatgacaagctgctggaaatctcccgcttagacgaagaa
gaggccaagaagattgtcctggcccaggtctccgaccacctgaccaaggagaaggcggag
ctgattcgggctaacgaggaagaaatcagtgccagagccgaccgctttgcccaccaaatc
atcgtggatgccatccagagcagcgcggcggatacggtcgcggaaacgaccgtgtcagtc
gtggacctgccaaacgatgacatgaaggggcggatcatcggccgcgaaggccggaacatc
cgctcttttgaagccatgactggggtggacttgatcattgacgatacgccaaatacggtc
accttgagcggttttgactccatcagacgggaagttgccaagcgggccctgcagaaactg
atcaaggacgggcggattcatccggcccggatcgaagagatggttgacaaggcgcgcaag
gaagtcaacgacgatatttacgaggctggtgaaagtgccttgatggaactgggcatccac
cggatgaacccggaactggtcaagatcctgggccggctgaagtaccggacttcctatggc
cagaacgtgctggcgcactcgattgaagtcgggaagctggccgggaccatggcagctgaa
cttggtttggatgaaaaattagcggttcgcgcgggattattacacgatattggcaaggca
atcgaccatgatatcgaaggctcccacgtagaaatcggtgttgaattgacccggaaatac
catgaaccggacctggtggtcaacgcgattgctgcccaccacggtgacgtgccgaagctc
tccttcatcgctgacctggtcgtggcggcggacacgatttcctccgcccggcctggggca
agaagcgaaagcttggagaactacatccgccgtttgacggaactggaagacattgccggc
agctatgacggcgtcaagcaggcatatgccatccaggccggccgggaagtccgcgtaatg
gttgagccaggcaagatctcagatgatgagatcacggttttggcccacgaaattcgggac
agggtcgagaaagaactcgattacccgggcaatatcaagatcaccgtaatacgggagaaa
cgtgccgtggcagttgccaaataa
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