Leucobacter denitrificans: H9L06_03365
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Entry
H9L06_03365 CDS
T06817
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ldn
Leucobacter denitrificans
Pathway
ldn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ldn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L06_03365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ldn03400
]
H9L06_03365
Enzymes [BR:
ldn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L06_03365
DNA repair and recombination proteins [BR:
ldn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L06_03365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNN63375
UniProt:
A0A7G9S6A0
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All DBs
Position
702933..705563
Genome browser
AA seq
876 aa
AA seq
DB search
MAKDGQFVWVDGRKLRVTNLDKVLYPSTGTTKGEVLAYYSAIAETMLPHCVDRPATRKRW
PDGVGEDGKQNSFFQKDIGEGAPEWVATGEIQHKDHVNEYPLVNDEATLVWLAQLASLEI
HVPQWRFDSAGKQQNPDRMVFDLDPGEGVKLTEVADVAFLVRDILSDMGLPSIPLTSGSS
GIHLYAALDGTLSSDEVAKVAKELARSLEADHPDDITSSMKRSLRPGKVFIDWSQNNAAK
TTVAPYSLRGRIAPTVAAPRTWRELASPHLKHLRFDEVLKRVERRGDPLAELLRDDAGER
GLAERGAEKLNEYRAKRDASKTSEPVPRAGRRDVEDSRAADAGSGSDAEGDSIGFASGAA
ANTDARSSLPRFVIQRHQARRLHYDFRLEHDGVLVSWAIPKGPPTDPKVNHLAVPTEDHP
MSYRHFEGVIPKGEYGAGKVEIWDSGHYELEKWRDDEVIVTLHGAPGGGLSGGLGESGHC
SGSKRFALFRAGESGGKPRWMIHLMSPANATHATSAESATSATSVERAQPVSSMRAPLTK
QTSPSTPTQSRTPTLSPMLALAGSEAEFSRLDLDEWGFEMKWDGIRALVEIAHDRTLIRS
RSGADISESYPEFFGLAEYVNAEAAVLDGEIVTLGPDGAPSFSLLQQRFGLTNERDIARA
RRAAPASLLVFDVLEVNGQDCTRLPYRQRRELLQGLVEVSAGSEATGGAPVAVPDHFDGT
AQDAADASAELGLEGVVAKRWNSAYHPGERSGDWMKFPIMHTDEAVVIGWRESTSDAKGF
ASLLLADRTETGDLSYAGRVGTGFSSAERRRIRTLLEPLQTSKPVVDVPAEAQRDAQWVR
PKLIGEVISKGRTRTGSFRQPVWRGWRPDKTLASMN
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagatgggcaattcgtatgggttgatgggcgcaagctgcgggtcacgaacctc
gacaaggtgctgtacccctcgactggcacgacgaagggtgaggtgcttgcgtactacagc
gcgatcgctgagaccatgctgccacactgtgtggatcggccagccacccgcaaacgctgg
cccgatggtgttggtgaagacggcaagcagaattcgttctttcagaaggacatcggcgag
ggcgcgcccgagtgggtggcgacgggcgagattcagcacaaggatcatgtgaatgagtac
ccgcttgtgaacgatgaggcgacgcttgtgtggctagcgcagctcgcgtcgcttgagatc
catgtgccgcagtggcggttcgacagcgcgggcaagcagcaaaaccccgatcgtatggtg
ttcgatctcgaccccggcgaaggtgtgaagctgaccgaggtcgccgacgtcgcgtttctg
gtgcgggatattttgagcgatatggggcttccgtcgattccgctcacgagtgggagctcg
gggatccacctctatgcggcgctcgatggcacactgtcgtcagatgaggtcgcgaaggtg
gcgaaagagctcgcgcggtctcttgaggcggatcaccccgacgacatcacgagttcaatg
aagcgttcgctgcggcccggcaaggtgtttattgactggagccagaacaatgccgcgaag
acgacggttgcgccgtactcgttgcgggggcggatcgcccccacggtcgcggccccgcgc
acctggcgggagctggcttcgccgcacctcaagcacctgcggttcgatgaggtgttgaag
cgtgttgagcggcgtggggatccgcttgcggagttgttgcgggatgacgctggcgagcgg
ggcctggctgaacgcggcgccgagaagctcaacgagtaccgcgcgaagcgcgacgcgtcg
aagacctccgagcccgtgccgcgggcggggcgccgtgatgtcgaggactctcgtgccgcc
gatgccggtagcggctccgatgcggagggcgacagtatcggctttgctagcggtgccgcc
gcaaatactgacgctcgctcctcgctcccccgattcgtgattcagcgtcaccaggcgcgg
cggctgcactacgatttcaggcttgagcacgacggtgtgctggtgagctgggcgattcct
aaggggccgccgaccgacccgaaggtaaatcaccttgcggtacctaccgaggatcatccg
atgtcgtaccggcatttcgaaggggtaatccccaagggcgagtacggtgctggcaaggtc
gagatctgggactcgggacactacgagctcgagaagtggcgggacgacgaggtcatcgtc
acattgcacggcgctcccggcggagggctcagcggtgggctcggtgagagtggtcactgc
agtggatcaaagcgcttcgcgcttttccgcgccggagagtctggcggcaagccaaggtgg
atgatccacctcatgagccccgccaacgccactcatgccaccagtgccgagagtgccacc
agcgccaccagcgtcgagcgtgctcaacctgtctcctcaatgcgcgcgccgctgacaaag
caaacgtccccctcaacgccaacgcaatcgcgaacaccaacgttgtcacccatgctcgcc
ttggcaggatccgaggccgagttctctcgcctggatctagatgagtggggctttgaaatg
aagtgggatgggattcgagccctggtcgaaatagcacacgatcgcacactcattcgtagc
aggtcgggtgctgatatcagcgaaagctatccggagttctttggtcttgcggagtatgta
aacgccgaagcagcggtactcgatggggagattgtgacgctcggccctgatggagctccg
agcttcagcttgctgcagcagcggttcgggctcacgaatgagcgcgacatcgctcgcgcg
cgacgtgcggcacctgcctcgctgctggtgttcgacgtgttggaggtgaatgggcaggac
tgcacgaggctgccgtatcgtcaacgtcgtgagctgctgcagggcctcgtcgaagtgtct
gctggctctgaggcgacgggcggagcacctgtcgcggttccggatcacttcgacggaaca
gcgcaggacgccgccgatgcgagcgccgaactaggtctcgaaggcgtggtcgcgaagcgc
tggaacagcgcgtatcacccgggagaacgctctggcgattggatgaagtttccgatcatg
cacaccgatgaggccgtggtgatcgggtggcgcgagagcacctcagatgcgaaggggttc
gcctcgctcctgctcgccgatcgcaccgagacaggagacctcagctacgcgggacgggtc
ggaacggggttctcgtcggcggaacgccggcggatccgcaccctgctcgaaccactgcag
acgtcgaagcctgtggttgacgttcccgccgaggcgcagcgagatgctcagtgggtgcgc
cccaaactcattggtgaggtcatatcgaagggacgcacccgaaccgggagctttcggcag
ccagtgtggaggggttggcggcccgataaaacgctggcctcgatgaactag
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