KEGG   Leucobacter denitrificans: H9L06_03365
Entry
H9L06_03365       CDS       T06817                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ldn  Leucobacter denitrificans
Pathway
ldn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ldn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L06_03365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ldn03400]
    H9L06_03365
Enzymes [BR:ldn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L06_03365
DNA repair and recombination proteins [BR:ldn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L06_03365
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QNN63375
UniProt: A0A7G9S6A0
LinkDB
Position
702933..705563
AA seq 876 aa
MAKDGQFVWVDGRKLRVTNLDKVLYPSTGTTKGEVLAYYSAIAETMLPHCVDRPATRKRW
PDGVGEDGKQNSFFQKDIGEGAPEWVATGEIQHKDHVNEYPLVNDEATLVWLAQLASLEI
HVPQWRFDSAGKQQNPDRMVFDLDPGEGVKLTEVADVAFLVRDILSDMGLPSIPLTSGSS
GIHLYAALDGTLSSDEVAKVAKELARSLEADHPDDITSSMKRSLRPGKVFIDWSQNNAAK
TTVAPYSLRGRIAPTVAAPRTWRELASPHLKHLRFDEVLKRVERRGDPLAELLRDDAGER
GLAERGAEKLNEYRAKRDASKTSEPVPRAGRRDVEDSRAADAGSGSDAEGDSIGFASGAA
ANTDARSSLPRFVIQRHQARRLHYDFRLEHDGVLVSWAIPKGPPTDPKVNHLAVPTEDHP
MSYRHFEGVIPKGEYGAGKVEIWDSGHYELEKWRDDEVIVTLHGAPGGGLSGGLGESGHC
SGSKRFALFRAGESGGKPRWMIHLMSPANATHATSAESATSATSVERAQPVSSMRAPLTK
QTSPSTPTQSRTPTLSPMLALAGSEAEFSRLDLDEWGFEMKWDGIRALVEIAHDRTLIRS
RSGADISESYPEFFGLAEYVNAEAAVLDGEIVTLGPDGAPSFSLLQQRFGLTNERDIARA
RRAAPASLLVFDVLEVNGQDCTRLPYRQRRELLQGLVEVSAGSEATGGAPVAVPDHFDGT
AQDAADASAELGLEGVVAKRWNSAYHPGERSGDWMKFPIMHTDEAVVIGWRESTSDAKGF
ASLLLADRTETGDLSYAGRVGTGFSSAERRRIRTLLEPLQTSKPVVDVPAEAQRDAQWVR
PKLIGEVISKGRTRTGSFRQPVWRGWRPDKTLASMN
NT seq 2631 nt   +upstreamnt  +downstreamnt
atggcgaaagatgggcaattcgtatgggttgatgggcgcaagctgcgggtcacgaacctc
gacaaggtgctgtacccctcgactggcacgacgaagggtgaggtgcttgcgtactacagc
gcgatcgctgagaccatgctgccacactgtgtggatcggccagccacccgcaaacgctgg
cccgatggtgttggtgaagacggcaagcagaattcgttctttcagaaggacatcggcgag
ggcgcgcccgagtgggtggcgacgggcgagattcagcacaaggatcatgtgaatgagtac
ccgcttgtgaacgatgaggcgacgcttgtgtggctagcgcagctcgcgtcgcttgagatc
catgtgccgcagtggcggttcgacagcgcgggcaagcagcaaaaccccgatcgtatggtg
ttcgatctcgaccccggcgaaggtgtgaagctgaccgaggtcgccgacgtcgcgtttctg
gtgcgggatattttgagcgatatggggcttccgtcgattccgctcacgagtgggagctcg
gggatccacctctatgcggcgctcgatggcacactgtcgtcagatgaggtcgcgaaggtg
gcgaaagagctcgcgcggtctcttgaggcggatcaccccgacgacatcacgagttcaatg
aagcgttcgctgcggcccggcaaggtgtttattgactggagccagaacaatgccgcgaag
acgacggttgcgccgtactcgttgcgggggcggatcgcccccacggtcgcggccccgcgc
acctggcgggagctggcttcgccgcacctcaagcacctgcggttcgatgaggtgttgaag
cgtgttgagcggcgtggggatccgcttgcggagttgttgcgggatgacgctggcgagcgg
ggcctggctgaacgcggcgccgagaagctcaacgagtaccgcgcgaagcgcgacgcgtcg
aagacctccgagcccgtgccgcgggcggggcgccgtgatgtcgaggactctcgtgccgcc
gatgccggtagcggctccgatgcggagggcgacagtatcggctttgctagcggtgccgcc
gcaaatactgacgctcgctcctcgctcccccgattcgtgattcagcgtcaccaggcgcgg
cggctgcactacgatttcaggcttgagcacgacggtgtgctggtgagctgggcgattcct
aaggggccgccgaccgacccgaaggtaaatcaccttgcggtacctaccgaggatcatccg
atgtcgtaccggcatttcgaaggggtaatccccaagggcgagtacggtgctggcaaggtc
gagatctgggactcgggacactacgagctcgagaagtggcgggacgacgaggtcatcgtc
acattgcacggcgctcccggcggagggctcagcggtgggctcggtgagagtggtcactgc
agtggatcaaagcgcttcgcgcttttccgcgccggagagtctggcggcaagccaaggtgg
atgatccacctcatgagccccgccaacgccactcatgccaccagtgccgagagtgccacc
agcgccaccagcgtcgagcgtgctcaacctgtctcctcaatgcgcgcgccgctgacaaag
caaacgtccccctcaacgccaacgcaatcgcgaacaccaacgttgtcacccatgctcgcc
ttggcaggatccgaggccgagttctctcgcctggatctagatgagtggggctttgaaatg
aagtgggatgggattcgagccctggtcgaaatagcacacgatcgcacactcattcgtagc
aggtcgggtgctgatatcagcgaaagctatccggagttctttggtcttgcggagtatgta
aacgccgaagcagcggtactcgatggggagattgtgacgctcggccctgatggagctccg
agcttcagcttgctgcagcagcggttcgggctcacgaatgagcgcgacatcgctcgcgcg
cgacgtgcggcacctgcctcgctgctggtgttcgacgtgttggaggtgaatgggcaggac
tgcacgaggctgccgtatcgtcaacgtcgtgagctgctgcagggcctcgtcgaagtgtct
gctggctctgaggcgacgggcggagcacctgtcgcggttccggatcacttcgacggaaca
gcgcaggacgccgccgatgcgagcgccgaactaggtctcgaaggcgtggtcgcgaagcgc
tggaacagcgcgtatcacccgggagaacgctctggcgattggatgaagtttccgatcatg
cacaccgatgaggccgtggtgatcgggtggcgcgagagcacctcagatgcgaaggggttc
gcctcgctcctgctcgccgatcgcaccgagacaggagacctcagctacgcgggacgggtc
ggaacggggttctcgtcggcggaacgccggcggatccgcaccctgctcgaaccactgcag
acgtcgaagcctgtggttgacgttcccgccgaggcgcagcgagatgctcagtgggtgcgc
cccaaactcattggtgaggtcatatcgaagggacgcacccgaaccgggagctttcggcag
ccagtgtggaggggttggcggcccgataaaacgctggcctcgatgaactag

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