Leishmania donovani: LDBPK_210880
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Entry
LDBPK_210880 CDS
T02289
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ldo
Leishmania donovani
Pathway
ldo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDBPK_210880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_210880
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LDBPK_210880
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LDBPK_210880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
13386418
NCBI-ProteinID:
XP_003860605
UniProt:
E9BF74
LinkDB
All DBs
Position
21:257395..264156
Genome browser
AA seq
2253 aa
AA seq
DB search
MLYDRVNDIGSSQGEAIRYILGAVSKNTVQTTLTTLEQLCSRSVELHRYTIKATCTALLA
ARSDERALLASRLVGEALGRPNGLTLVACALDGCSSTLTKESLTALMANDLKLSPMKQMQ
MAMALVLGGNAMVKTAATDILEDFNVPQAALKEDDGGVRAAALLSRQVGLAPENLDGQLA
NVCHTVALPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSSTYASLMTASGKSSPKSMSGTTTLVNAMPLLDALCEGSPKGFNWDLVI
RMLDQPDGEPFRVKHISVIFDAYHRFQPDNEFPSVALFLGRWTNTMRQRSVLEYILRHPD
KVNRKPLAIDAPSELLPATKPPGVTTAEMDLWRSTAFMEAAVHVASREKDFDNDVFRPAA
EKLSLLFLYCLFTGNFQGTVKHFTVMKHLLKAHCPSLDLVSQHIVPEMERRGRLSTVIGV
LSDLTEAAPERLVDVLQVVFKCKPAAKRVLAESGSPRLVTAVAMCMEEAGESSDKWLQRA
LEGKLHFRASSTENRFAVAMNIVEVAEMLLEKQLYTVSATAALNALLASPLKEVLKSVTD
CAKALLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIATVENLLKSTVPRDKQLYACIV
GIMFDETSAISCYPRKELQLFAELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPGNYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDAAARGGAAASAE
PGEGSPTSPTSPKQPGSPNKALAAIDPAIVSAASSQSKKFTDMAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLESNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMERALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKSLLCQGIREGKLVPVVSFITRVLTSCAKSRFFCPPNPWTMAQLVLLME
MYTLPHLRVTLRFELELLLKSLDQSMQDLAQYMRLHASHASTETRLRDVYDEININESPD
FRVGEDESNVSAAVVAAQPAPATASPPMQQSLRSSARPLQASAEPFQPKDKAQAPPSEVS
RVMQMLNKPIRPPIGISLNWVFSTLSDPAFGNNAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTERLVLKDYARDPFPDDMLVAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNLELCMRAVEYSVGEEAATATSRFLFDVAREKA
SAFAEQEPLPLPPDQLEAAELLRVMGETLVPSGRMPAPQRDVYDDFYSCVPPVAVFNMVL
RSVEEAVSRYHSNENAPPLDFAQLDAASQKPGGLTDDAQAPIRQHLGRLMSLITEESSPY
FLSPMLNKLMSLAVSTERLTKLVNSSAKNTQAAAATAAAAAAVTNPDGTPNAAEDPAWQQ
EALRISAALHQLYLRIVLRCRECGEETNRDEFTRLFLRHSHCYSFSKLTTDLIRIKVLKC
SEFDDALAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLMALDTIARTRAPRAA
PAAPAQTLPSYVTEPPLSKIVPSQITKLLVPCDCVRPGEDEAFQKEVGQLMNDWISVWSQ
KSHRYAEKRIPSVEFVKTLQQRRMLDTAHLQTFLSLGVRYCVEYYANTMLAMERADGNIT
SETLVGTRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRR
VLDAVTRVLTEHHNFVAKARPAPAWTLAADEQFVPLFQQQPYVRLLSNLVYSLHRLEIST
TRAMSTEFTSAFHTFLRRVHPMEYPGFVFGWLEILSHRHIIPRFMNVQSMWPHYVDLLAG
AMMFVKFLIKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLN
TVLCSFPPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKATFTSFNVQPQLLANLEMMI
TNDDAPVRDSVLTDVLNDLTQASAKRSLINAVVQHMAIVYLRTHDNRIPANFAKSNVLAC
YRFLCSRLNTKRRYYMLGACANQLRFPNIQTNFFANVVLNLFLPSPTVDAHTQTCVQEQI
TRVLAEKTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLHHTVHTRLS
KTGSGGAAALDGARADSANAAATTSGIGATPSA
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacattggcagctcgcagggggaggcgattcgctacatc
cttggtgccgtctccaagaacaccgtacagacaacgctgacgacgctagagcagttatgc
tcccgctctgttgagctccaccggtacacgatcaaggccacatgcacagccctgctggca
gcgcggagcgatgagcgggcactgctggcatctcggttggtgggcgaggcacttgggcgg
ccgaacgggctgaccctggttgcctgcgccctcgacggctgctcctcgaccctgacaaag
gagtccctcactgcgttgatggcgaacgacctcaagttgtctcccatgaaacagatgcag
atggccatggcactcgtgcttggcggaaacgcgatggtcaagacggcagcgacggatata
ctggaggacttcaacgtgcctcaggcggcgctgaaggaggatgatggcggcgtgcgtgcg
gcggcgctcctgtcgcggcaggtaggtcttgcccccgaaaacctggacggccagctggcg
aacgtgtgccacacggtcgcgttgccgaagccgaagacagaggtgaagccgcgcgtgagc
gtggcgggcgtcctgcgcgagctaggaacggggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactccttcacagagcgcgacggagccgaggtgctcgcc
ttcttcgcttctgcgggctcggccgtcaacgacagcagcacgtacgcgtccctcatgacg
gcgtcagggaagagctcgccaaagagcatgagcggcacgacgacgctcgtgaacgcgatg
ccgctactcgacgcgctgtgtgaggggagcccgaaaggcttcaactgggaccttgtcatc
cgcatgcttgaccagccggacggcgagccgttccgcgtgaagcacatctccgtcatcttt
gacgcgtaccaccgcttccagccggataacgagttcccgtctgtggcgttgtttctaggc
aggtggacgaacacgatgcgccagcgcagcgtgctcgaatatatcttgcgccaccccgac
aaggtcaatcgcaagccgctcgcgatagacgccccgtcggagctgttgccggcgacgaag
ccgcccggcgtgacgacagctgagatggacttatggcgctccacggcgttcatggaggct
gccgtgcacgtggcgagtcgcgaaaaagacttcgataacgacgtgttccgccccgccgcg
gagaagctgtcgctgctcttcttgtactgcctcttcacaggcaacttccagggcacggtt
aagcatttcacggtcatgaagcacctgctcaaggctcactgcccctctctggacctcgtg
tcgcagcacatcgtgcccgagatggagaggcggggccgactcagcaccgtgatcggcgtg
ctctcggacctgacggaggcggctccagagcgtctcgtggatgtgctgcaggttgtgttc
aagtgcaagcctgccgcgaagcgcgtgctcgccgagagcgggagccctcgcctcgtcact
gctgtcgccatgtgcatggaggaagcaggtgagtcgagtgacaagtggctccagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcgccgtggccatg
aacatcgtcgaggtagctgagatgctcctggaaaagcagctctacacggtgagcgcgaca
gcggctctcaacgccctgctcgcttccccgctgaaggaggtgctgaagagcgtgacggac
tgcgccaaggcgctcctcgcctcgacggactctctcttccccgacgacgtcgagaacgaa
gcgctggagttcttcaaaaagatgtacgccgctggcagcaccgcagctgccattgccact
gttgagaacctgctgaagagtacagtgccacgcgacaagcagctctatgcgtgcatcgtg
ggtatcatgttcgatgagacgtccgccataagctgctacccgcgcaaggagctgcagctg
ttcgccgagttgtacggccagatgatcgcgaaagatctgctgccgccgaaccagcagcag
cgcgcgtggggtgtcctgctgccagccgtcgcgaagcccggcaactacgcgatggaggaa
tacggtattatcgcgctcgagcaggtgaaaccacggctgccggactggccgcagtacggt
cgcgctctgcgctacgtgcgggacttggatttccgcgttcccggcatcgtcgccgccatc
aaccgagggatcaagcaggaggacgccgctgcgcgtggcggcgcagcggcgtcggcggag
cccggtgagggaagcccaacctcgccaacgtccccgaagcagcctggctcgccgaacaag
gcgctcgctgccatcgacccggccatcgtgtcggcggcgtcgtcgcagtcgaagaagttc
acggacatggcggcggcgaagctgcacacgctggacatcggtacacttgtgacgaacgcg
aacgtgacggccccgccgcgcgtgattcaggaacagatcaacttcctgattggcaacacc
gacgtgcgcaacctggagagcaacgcgacagagctgtcacagttgctgcggccggagtac
tacgagtactttgcggactacctggtggtgaagcgcgcggcgctggaacccaactaccac
tctatgtacattgagctgattgcgaagctgcactccaaggacatggagcgcgcactgcgc
aaggccactatcggtgcagtgcaccgtctgctgagctcgcagaagatcggcaccgactcg
agcgagcgtattctactgcgcaaccttggctcctggctcgggagcatcacgctggagaag
aacatccccatcttgcagcaggacctgcacttcaagtcgctcctctgccagggtattcgc
gagggaaagctagtcccggtcgtttcgttcattacgcgcgtcctgacaagctgcgccaag
tcgcgctttttctgcccgccaaacccgtggacgatggcgcagctggtgctgctgatggag
atgtacacgctaccccacctgcgtgtgacgctgcgcttcgagctggagctgctgctgaag
tcgctggatcagtcgatgcaggacttggcgcagtacatgcggctgcatgcctctcacgcc
tccaccgagacgcgcctgcgcgacgtgtacgatgagatcaacatcaacgaaagccccgac
ttccgcgtcggtgaggatgagagcaacgtgtctgcggcggtcgtcgcagcgcagccggcg
ccggctaccgcatcaccgccgatgcagcagtcgctgcgtagcagcgctcgcccgctgcaa
gccagcgccgagccgttccagcccaaggacaaggcgcaggccccgccgtccgaggtgagc
cgtgtcatgcagatgctgaacaagccgatccgccctccgatcggcatctcgctgaactgg
gtgttttccacgcttagcgatcccgcctttggcaacaatgcccagcgtctcactgatcat
cggctcgagattgtcgcgcagctgcaggccgtggtcgacgaggccgtgagctactgcatg
cagcgcagtgtcgctatcgccgcccgtacgacggagaggctggtgctgaaggactatgcg
cgcgacccgttccccgatgacatgctcgtcgctggcgatgccatggcccgctcactggca
tctagcttgagctacgtgatggtgcgcgatgagctgccgctgctcctgcaccgctccatg
acaaacctgctggagcggattctggccccttacaccccactggagcacaaggcaacaatt
cgcgacaccctggtggcgcgcaacctggagctgtgcatgcgtgcagtggagtacagcgtc
ggtgaggaggcggcgacggctacgagccgattcttattcgacgtcgcgcgcgagaaggcc
agcgcctttgcggagcaagaacctctgccactgccgccagaccagctcgaggccgcggag
ctgctgcgcgtgatgggtgagacgctcgtgccgtctggccggatgccggccccgcagcgg
gatgtctacgatgacttctacagctgcgtgccgcctgtggccgtgttcaacatggtgctg
cgcagcgtcgaggaggcggtgtcgcggtaccactcgaacgagaacgccccgccgctggac
tttgcgcagcttgatgccgccagccagaagccgggcggtctgactgatgacgcgcaggcc
cccatccgtcagcacctgggccgtctcatgagcctcatcacggaggagtcgagcccctac
ttcctcagccctatgctgaacaagctcatgtccctcgccgtatcgacggagcggctgacc
aagctggtcaacagcagcgccaagaacacgcaggccgctgctgctaccgccgccgctgct
gccgctgtcaccaaccccgacggcaccccgaacgcggcagaggacccggcatggcagcag
gaggcgctgcgcatctccgcagcactgcatcagctgtacctgcgcattgtgctacggtgc
cgcgagtgtggcgaggagacgaaccgcgacgagttcacgcggctgttcctgcgccacagc
cactgctattccttctcgaaactgacgacagacctcatccgcatcaaggtcctgaagtgc
agcgagttcgatgacgccctggcgaaggcgctgaccaacggcacgtccaactacgtcacc
tttgcgggtgacatcatcaccgacgtcatcatcaaggagaagctcgtggcgtcgaaggac
atgcgccgcacgctcatggccctcgacacgattgcgcggacgcgagcgccgcgcgccgcg
ccggcggcgccggcacagacgcttccgtcgtacgtcacggagccgcctctgagcaagatt
gtgccgagccagattacgaagctcctcgtcccgtgcgactgcgtccggcctggcgaggac
gaggccttccaaaaggaggtgggacagctcatgaatgattggatctcggtgtggtcgcag
aagagccaccgctacgccgagaagcgcatcccgtccgtcgagtttgtgaagacgctgcag
cagcgccgcatgctggacacggctcacctgcagaccttcctgagcctgggcgttcgctat
tgtgtggagtactacgccaacacaatgcttgcgatggagcgcgcagacggcaacatcacg
agcgagacgttggtgggcacgcggcctggcggcccgccaggctaccgcactccgtacacc
gcaaagcccttcgtcatgtgcgatggctttgtggagctggttatggtgctgctgcagtgc
tgttcgctgcgcaacgaggcctcgcacgacttgcgggccgagaccacgcttctacgccgc
gtgctggatgccgtgacgcgcgtgctgacggagcaccacaacttcgttgccaaggctcgc
cctgctcctgcgtggacgctcgcagccgatgagcagttcgtcccgctctttcagcagcag
ccgtacgtgcgcttgcttagcaacctcgtatactcgcttcaccggctggagatctcgacg
acgcgtgccatgtcgacagagttcacgagtgccttccacacgtttctgcgccgcgtgcac
ccgatggagtacccgggctttgtttttggctggctggagatcctgtcgcaccgccacatc
atcccacgctttatgaacgtgcagtcgatgtggccccactacgttgacctcctcgccggt
gccatgatgtttgtgaaattcttgatcaagggcaaccgcatctccccgaacggcctggtc
ttctacaagtcgctgctgaagctcgtgctggtgctcctgcacgactacccgcggttcctt
atcgcacagcactacccgctctgcgaggccatttcgctctcgtgcgtgcagctgctgaac
acggtgctgtgctccttcccacctgacaagcgcctgccggagccgttcccccacgtcgac
tccaacgatccggcgatgctgcaggtgctcgacacatccgtgcaggaggcgtgcatcaag
gccaccttcacctccttcaacgtgcagccgcagctcctggcgaatcttgagatgatgatc
acgaacgatgatgctccggtgcgcgacagcgttctgacagacgttctgaacgacctgacg
caggcctcggccaagcgcagcctcatcaacgccgtggtgcagcacatggccatcgtgtat
ctgcgcacccacgacaaccgcatccccgcgaactttgccaagtcgaacgtactcgcgtgc
taccgcttcttgtgcagtcgcctcaacacgaagcgtcgctactacatgctcggcgcctgc
gctaaccagctgcgtttcccgaacattcagacgaacttctttgcgaatgtggtgctgaac
ctttttctgccgtcgccgactgtagacgcgcacactcagacctgtgtgcaggagcagatc
acgcgcgtgctggcggagaagacggtgattgtgcagccgcatccatggggcgtgctcaac
acctttgtggagctgatgcgcgagcccaagtacaagttctgggagacctccttcattcac
tacgcccccctcgactccatgttcacaaagctgcaccacacagtgcacacgcggttgagc
aagactggcagtggcggcgccgctgctctcgacggcgcccgagccgattcggccaatgcc
gcggcgaccacctccggcatcggtgccacgccttctgcgtag
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integrated database retrieval system
