Leclercia sp. J807: GNG26_00960
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Entry
GNG26_00960 CDS
T06440
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lea
Leclercia sp. J807
Pathway
lea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GNG26_00960 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lea03021
]
GNG26_00960 (rpoB)
03400 DNA repair and recombination proteins [BR:
lea03400
]
GNG26_00960 (rpoB)
Enzymes [BR:
lea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GNG26_00960 (rpoB)
Transcription machinery [BR:
lea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GNG26_00960 (rpoB)
DNA repair and recombination proteins [BR:
lea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GNG26_00960 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QGU08993
LinkDB
All DBs
Position
197099..201127
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGDTASFDIEANGKVYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDTIEGSGIL
SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLDEEGRFVDDLVTCRSKGESSLFSNDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFGRIYAVLVSGGVEAEKLDKLPRDRWLELGLADEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGTDVCQKVDLNTFSDEEVMRLAENLRKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgttccgtattcccaattaag
agctacagcggtaactccgagctgcaatacgtcagctaccgccttggcgaaccggtattt
gacgttcaggaatgtcagatccgtggcgtgacctactcggcaccgctgcgcgttaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtactttcgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagcccgggcgtcttcttcgacagcgat
aaaggtaaaacgcactcttccggtaaagtactgtataacgcgcgtatcattccttaccgt
ggttcctggctggacttcgagttcgatccgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgcctgcgaccatcattctgcgtgcgctgaactacaccactgagcagatt
ctggatctgttctttgagaaagttgtctttgaaattcgcgacaacaagctgcaaatggaa
ctggtgccagagcgtctgcgtggtgataccgcgtcgttcgacatcgaagccaacggcaaa
gtgtatgtggaaaaaggccgccgtattactgcgcgccacatccgtcagctggaaaaagat
gaaatcaaacacatcgaagttccggttgagtacattgctggcaaagttgcagcaaaagac
tacgttgatgcatctactggcgagctgatctgcccagcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtccgtacatgtccgaaaccgtacgtgtcgacccaaccaccgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccaccaactcgcgaagcg
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctctccgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgtgacacgatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatctccgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaaccca
ctgtctgagatcacgcacaaacgtcgtatctctgcactcggcccaggcggtctgactcgt
gagcgcgcaggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
acgaacgaatacggtttcctcgagaccccgtatcgtaaagtgactgacggtgttgtaacc
gacgaaattcactacctgtctgctatcgaagaaggtaactacgttatcgcccaggcgaac
accaacctggacgaagaaggtcgctttgttgatgacctcgttacctgccgtagcaaaggt
gaatccagcttgttcagcaacgaccaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgctgttgactccggtgtaactgcagttgctaaacgt
ggcggtactgttcagtacgtggatgcatcccgtatcgttatcaaagttaacgaagacgag
atgtacccaggcgaagcgggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggtgagccagttgagcgcggc
gacgtgctggcagacggtccgtccaccgaccttggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccactattcacatccaggaactggcctgtgtctcc
cgtgacaccaagctggggccagaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacggtgtttccggtacggttatcgacgtacaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
tctgaagagctgcagatccttgaagctggcctgtttggtcgtatctacgcggtgctggtt
tccggtggtgttgaagctgagaagctcgacaagctgccgcgtgaccgctggctggaactg
ggcctggccgacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggccgttaaacgtcagatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaaccca
ctgggcgtaccgtctcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggtaccgacgtttgccagaaagtcgac
ctgaacaccttcagcgatgaagaagtgatgcgtctggctgaaaacctgcgtaagggtatg
ccaatcgcaacgccagtcttcgatggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccaagttctggccagatcactctgttcgacggtcgtaccggtgagcag
ttcgagcgccaggtaaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcacgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgcttgaagca
tacggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggaaccgggcatgcca
gagtccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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