Leclercia sp. LSNIH3: C3F35_15170
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Entry
C3F35_15170 CDS
T05316
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C3F35_15170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leh03021
]
C3F35_15170
Transcription machinery [BR:
leh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C3F35_15170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YicC_N
DNA_ligase_A_N
D27-like_C
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AUY40019
LinkDB
All DBs
Position
complement(3116900..3118882)
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AA seq
660 aa
AA seq
DB search
MPNTVRVDPDSRTERQRQKYKYALALKVGSRIADTNQKNKCGYRLMEQNPQSQLKLLVQR
GKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAENSNNTD
EDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATHVGSELSQEEMDDD
EDEDEEESDDDSSDDDNSIDPELAREKFAELRTQYEVTRDTIKAKGRSHAAAQEEILKLS
EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKMCVEQCKMPKKNFITLFTGNETSE
TWFNAAIAMNKPWSEKLRDVAEDVHRGLQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK
IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaataccgttcgggtagatcccgacagccgcactgagaggcagcggcaaaaatac
aagtacgccctcgctttaaaggttggcagccgtatcgccgacaccaatcaaaagaataag
tgtggataccgtcttatggagcaaaacccgcagtcacagctgaaacttcttgtccaacgt
ggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatc
gtcgactccgatcagatcgaagacatcatccaaatgatcaatgacatgggtattcaggtg
atggaagaagcccctgatgccgatgatctgttgcttgctgaaaactcaaacaacaccgac
gaagatgcagaagaagctgctgcacaggttctgtcgagcgttgagtctgaaatcggccgc
acgacagacccggtgcgcatgtacatgcgtgaaatgggtaccgttgaactgttgacccgc
gaaggcgaaattgacatcgccaaacgtatcgaagacgggatcaaccaggttcagtgctct
gttgccgagtaccctgaagccatcacctatctgctcgagcagtacgatcgtgtggaagca
gaagaagcacgtctgtccgatctgatcaccggctttgtcgatccgaacgcggaagaagac
atggcgcctacggcgacgcacgtcggctctgaactgtctcaggaagagatggacgatgac
gaagacgaagacgaagaagagagcgacgacgacagcagcgacgatgataacagcatcgac
cctgaactggcgcgcgagaagttcgctgaactgcgtacgcagtatgaagtgacccgtgac
accattaaagccaaaggccgtagccatgctgccgctcaggaagagatcctgaagctttct
gaagtgttcaaacagttccgcctggtgccaaaacagttcgattacctggttaacagcatg
cgcgtcatgatggaccgcgtccgtacccaggaacgcatcatcatgaagatgtgcgttgaa
cagtgcaaaatgccgaagaagaacttcatcaccctgttcaccggcaacgaaaccagcgaa
acctggttcaacgcggctatcgcgatgaacaaaccgtggtctgaaaaactgcgtgatgtg
gctgaagacgtacaccgtggtctgcagaagctgcaacagattgaagaagagaccggcctg
actatcgagcaggtaaaagacattaaccgtcgtatgtccatcggtgaagcgaaagcccgc
cgtgcgaagaaagagatggttgaagcgaacttgcgtctggttatctctatcgccaagaaa
tacaccaaccgcggcctgcagttcctggatctgattcaggaaggtaacatcggtctgatg
aaagcggttgataagttcgaataccgtcgtggttacaagttctccacctacgcaacctgg
tggatccgtcaggctatcacccgctctatcgcggatcaggcgcgcaccatccgtattccg
gtgcatatgattgagaccatcaacaagctcaaccgtatttctcgccagatgctgcaggag
atgggccgcgagccaacgccagaagagctggctgagcgcatgctgatgccggaagacaag
atccgcaaagtgctgaagatcgccaaagagccaatctccatggaaacgccaatcggcgac
gatgaagattcgcatctgggtgatttcatcgaggataccaccctcgagctgccgctggac
tctgcgaccaccgagagcctgcgtgctgccactcacgatgtactggctggcctgaccgcc
cgtgaagcgaaagtcctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctg
gaagaagtgggtaaacagttcgacgtgacccgcgaacgtatccgtcagatcgaagcgaag
gcgctgcgtaaactgcgccacccgagccgctctgaagtgctgcgtagcttcctggacgac
taa
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