Leclercia sp. LSNIH1: C2U54_11655
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Entry
C2U54_11655 CDS
T05297
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lei
Leclercia sp. LSNIH1
Pathway
lei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U54_11655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lei03400
]
C2U54_11655
DNA repair and recombination proteins [BR:
lei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U54_11655
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C2U54_11655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
UB2H
SBDS_domain_II
AAA_30
Helicase_C_2
AAA_22
DUF87
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AUU84619
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All DBs
Position
2356937..2358952
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AA seq
671 aa
AA seq
DB search
MSKPFKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDFALRVELFDEEVERLSLFDPLTGHVESTIQR
FTVYPKTHYVTPRERIVQAMEDIKVELADRRRVLLENNKLLEEQRISQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLG
QNIAKTKTKGRGKSRSPVEADTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL
HQLRDLFIAAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactgaattccgctttccgtccttccggcgatcagcctgaagcg
attcgccgtctgaaagaggggctggaggatgggcttgcgcaccagacgctgctgggggtg
accgggtcgggtaaaaccttcaccgttgccaacgtgatcgccgatctccagcgccctaca
atggtgcttgccccgaacaaaaccctggcggcgcagctctacggcgagatgaaagagttc
ttcccggagaatgcggtggagtacttcgtgtcgtactacgactactatcagccggaagcc
tacgttcccagctcggacacctttatcgagaaagatgcctcggtgaacgagcatatcgag
cagatgcgtctctccgcaaccaaggcgctgcttgagcgccgtgacgtggtggtggtggcc
tcggtgtcggctatctacggcctcggcgacccggatctctacctgaagatgatgctgcac
ctgaccgtggggatgattatcgatcagcgcgccattttgcgtcgcctggccgagctgcag
tacacccgtaacgatcaggcgttccagcgcggcacgttccgcgtgcgcggcgaagtgatc
gacatcttcccggcggagtcggacgacttcgcgctgcgcgtcgagcttttcgatgaagag
gtggagcggctgtcgctgttcgacccgctgaccggccatgtggaatcgaccattcagcgc
ttcacggtctacccgaaaacccactacgtcaccccgcgcgagcgcatcgtgcaggcgatg
gaggacatcaaggttgaactggcggatcgccgcagggtgctgttggaaaataacaagttg
ctggaagagcagcgtatcagccagcgtacccagttcgatctcgagatgatgaacgagctg
ggctactgctccggtatcgaaaactactcgcgctatctctctggccgtgggccgggcgaa
gcgccgccaaccctgtttgactacctgccggcggatggcctgctggtggtggatgaatcc
cacgtcaccattccgcagattggcgggatgtatcgtggcgaccgggcgcgtaaagagacc
ctggtggagtacggcttccgtctgccgtcggcgctggataaccgtccgatgaagtttgaa
gagttcgaggcgctggcgccgcaaaccatctacgtgtcggctacgccaggtaactacgag
ctggagaagtcgggcgacgaagtggtggatcaggtggtgcgtccgaccggcctgctggac
ccgattatcgaagtacgcccggtggccacccaggtagatgacctgctctcggagatccgc
gcccggtcggctattaacgagcgtgtgctggtgacgaccctgaccaagcggatggcggaa
gacctgaccgaatacctcgaagagcacggtgagaaggtgcgctatctgcactcggatatc
gacaccgtggagcgcatggagattatccgcgatctgcgtcttggcgagttcgatgtgctg
gtggggatcaacctgctgcgtgaggggctggatatgccagaagtgtcgctggtggcgatt
ctggacgccgacaaagagggcttcctgcgttccgagcgctcgctgatccagaccattggc
cgtgcggcacgaaacgttaacggcaaagcgattctctacggggataagatcaccccgtcg
atggcgaaagcgatcggcgaaaccgaacgccgtcgcgagaagcagcaacgctataacgaa
gagcacgggatcgttccgcaggggctcaacaagaaggtggtggatatcctgcagctcgga
cagaatatcgcgaaaaccaaaaccaagggtcgcggcaagtcgcgctcaccggttgaggcc
gataccgtggcactgacgccgaaagcgctgcagcagaaaatccacgagctggaagggcag
atgatgcagcacgcacagaacctggagttcgaagaggcggcgcagatccgcgaccagctg
catcagctgcgggatttattcatcgccgcgtcgtag
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