Leishmania sp. Namibia: 94188936
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Entry
94188936 CDS
T10410
Symbol
JIQ42_05298
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lein Leishmania sp. Namibia
Pathway
lein03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lein00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94188936 (JIQ42_05298)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lein03019
]
94188936 (JIQ42_05298)
Messenger RNA biogenesis [BR:
lein03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
94188936 (JIQ42_05298)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
94188936 (JIQ42_05298)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
DUF5865
Motif
Other DBs
NCBI-GeneID:
94188936
NCBI-ProteinID:
XP_067709752
LinkDB
All DBs
Position
21:299210..305953
Genome browser
AA seq
2247 aa
AA seq
DB search
MLYDRVNDISSSQGEAIRYILGAVSKNTVQTTLTTLEQFCSRSVELHRYTIKATCTALLA
TRSDERALLASRLVSEALGRPNGLTLVACALDGSSSTLTKESLTALMASDLRLSPMKQMQ
MAMALVLGGNAMVKTAATDMLEDFNVPQAALKEDDGGVRAAALLSRQVGLAPANLDGQLA
NVCHTVGLPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSNTYASLMTASGKSSPKSMSGTTTLVNAMPLLDALCEGSPKGFNWDLVI
RMLDQPDGEPFRVKHISVIFDAYHRFQPDNEYPSVALFLGRWTNTMRQRSVLEYILRHPD
KVNRKPLAIDAPSELLPATKPPGVTAAEMDLWRSTAFMEAAVHVASRDKDFDNDVFRPTA
EKLPLLFLYSLFTGNFQGTVKHFAFMKHLLKAHCPSMELVSQHIVPEMERRGRLSTVIGV
LSDLAESVPERLVDALQVLLKCKSAAKRVLAESGSPRLVTAVAMCMEEAGEPSDKWLQRA
LEGKLHFRASSTENRFAVAMNIVEVAELLQEKQLYVVSTTAALNALLASPLKEALKSVTD
CSKTLLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIFTLENLLKSAVPRDKQLYACIV
GIMFDETSAISCYPRKELQLFAELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPGNYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDAAARSGGASAGE
PGDGVPTSPTSPRQPGSPNKALPAIDSAIVSAASSQSKKFTDIAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLDSNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMDCALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKSLLCRGIREGKLVPVVSFITRVLSSCAKSRFFCPPNPWTMAQLSLLME
MYTLPHLRVTLRFELELLLKSLDQSMQDLAQYMRLHASHASTETRLRDVYDEINVNESPD
FRVGEDESNAPAAVVAAQPTPATASPPVPQSLRSSARPLQASAEPFQPKDKAQTPPSEVS
RIMQMLNKPIRPPITISLNWVFSTLSDPSFGNNAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTERLVLKDYARDPFPDDMLLAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNLELCMRAVEYNVGEEAATATSRFLFDVAREKA
NAFAEQEPLPLPPDQIEAAELLRVMSETLVPSGRMPAPQREVYDDFYSCVPPVAVFNMVL
RTVEEAVSRYHSNENAAPLDFAQLDAANQKPGGLADDAQAPIRQHLSRLMSLVTEESSTY
FLSPMLNKLMSLAVSTERLTKLVNSSAKNAQAAAAAVAVPHPDGVPSAAEDPAWQQEALR
ISAALHQLYLRILLQCRECGEETNRDELTRLFLRHSHCYSFSKLTTDLIRIKILKCSDFD
EALAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLVALDTIARTRAPRAAPAAP
AHTLPSYVTEPPLSKIVPSQITKLLVPCDCVRPGEDEAFQKEVGQLMNDWITVWSQKSHR
YAEKRIPSVEFVKTLQQRRMLDTAHLQSFLSLGVRYCVEYYANTMLAMERADGNITSETL
VGTRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRRVLDA
VTRVLTEHHNYVAKARPAPTWTLTADEQIIPLFQQQPYVRLLSNLVYSLHRLEISTTRAM
STEFTTAFHAFLRRVHPMEYPGFVFGWLEILAHRHIIPRFMNVQSMWPHYVDLLAGAMMF
VKFLTKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLNTVLC
SFPPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKATFTSFNVQSQLLANLGAMITSDD
VPVRDSVLMDVLSDLTQASAKRSLINAVVQHMAIVYLRTHDNRIPANFAKSNVLTCYRFL
CSRLNTKRRYYMLGACANQLRFPNIQTNFFANVVLNLFLPSPSVDAQTQTCVQEQITRVL
AEKTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLRHTVHTRLSKAGG
AAALDGARADPATSTTTTSGIGAAPSV
NT seq
6744 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacattagtagctcgcagggtgaagcgattcgctacatc
ctcggagccgtctccaagaacactgtgcagacaacgctgacgacgctagagcagttctgc
tcccgttccgttgagctccaccggtacaccatcaaagccacgtgcactgccctgctggca
acgcgcagcgatgagcgagcactgctggcttctcggctggtgagtgaggcgcttgggcgg
cctaatgggctgaccctggttgcctgtgccctcgacggcagctcctcgacactgacgaag
gagtccctcactgcattgatggcgagcgacctgaggctgtcccctatgaaacagatgcag
atggccatggcgctcgtgctgggaggaaacgcgatggtcaagacggcagcgacagacatg
ctggaggacttcaacgtaccgcaggcggcgctgaaggaggacgatggcggcgtgcgcgcg
gcggcgctcctgtcgcggcaggtagggctggcacccgccaacctcgacggccagctggcg
aacgtgtgccatacggtcgggttgccgaagccgaagacggaggtgaagccgcgcgtgagc
gttgcgggcgtccttcgcgagttgggaacagggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactcctttacagagcgcgacggtgccgaggtgcttgcc
ttcttcgcctccgcgggctcggccgtcaacgatagcaacacgtacgcgtccctcatgacg
gcgtcgggcaagagctcgccaaagagcatgagcggcacgacgacgctggtgaacgcgatg
ccgctactcgacgcgctgtgtgaggggagcccgaagggctttaactgggaccttgtcatc
cgcatgcttgatcagcccgacggcgagccgttccgagtgaagcacatctctgtcatcttc
gacgcctaccaccgcttccagccggacaacgagtacccctctgtggcactgtttctgggg
aggtggacgaacacgatgcgccagcgcagcgtgctggagtacatcttgcgccacccggac
aaggttaatcgaaagccgcttgcgatagacgccccgtcggagctgctgccggcgacgaag
ccacccggggtgacggcagcagagatggacctatggcgctccacggcgttcatggaggct
gccgtgcacgtggcgagccgcgataaggacttcgacaatgacgtgttccgccccactgcg
gagaagctgccgctgctctttctgtacagtctcttcacggggaacttccaggggacggtt
aaacacttcgcgttcatgaagcacctgctcaaggcccattgcccgtctatggagctggtg
tcgcagcacatcgttcccgagatggagaggcggggccgcctcagtaccgtgatcggcgtt
ctctcggacctggcggagtccgttcccgagcgtcttgtagatgcactgcaggtgttactc
aagtgcaagtctgcggcgaagcgcgtgctcgccgagagcgggagcccccgccttgtcact
gccgttgccatgtgcatggaggaggcaggtgagccgagtgacaagtggctgcagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcgctgtggccatg
aatattgtcgaggtagctgagctgctccaagagaagcagctctacgtggtgagcacgacg
gcggccctcaacgccctgctcgcatccccgctgaaggaggcactgaagagtgtgacggac
tgctccaagacactgctcgcctcgaccgactcactctttcccgacgacgtcgagaatgag
gcgctggagttcttcaaaaagatgtacgccgctggcagcactgcggctgccattttcact
ctcgagaacctgttgaagagcgcagtgccgcgcgacaagcagctgtacgcgtgcatcgtg
ggaatcatgttcgacgagacatccgccatcagctgctatccgcgcaaggagctgcagctg
ttcgccgagttatatggccagatgatagcgaaggatctgctaccgccgaaccagcagcag
cgagcgtggggtgttctgctgccggccgtcgcgaagcctggaaactacgcgatggaggag
tacggtattatcgcgctcgagcaggtgaagccgcgacttccggactggccgcagtacggc
cgcgctctgcgctatgtgcgggacttggatttccgtgttcccggcatcgtcgccgccatc
aaccgcggcattaagcaggaagacgccgcggcgcgtagcggtggggcgtcggcgggggag
cccggtgatggagtgccaacgtcgccaacgtccccgaggcagcctggctcgccgaacaag
gcgctccctgccatcgactcggccatcgtgtcggcggcgtcgtctcagtcgaagaagttt
acagacatagcggcggcgaagctgcacacgctggacatcggtacgctagtgacgaacgcg
aacgtgacggccccgccgcgcgtgattcaggagcagatcaacttcctcattggcaacacc
gacgtgcgcaacctggacagcaacgcgacggagctgtcgcagctgctgcggccggagtac
tacgagtactttgcggactacctcgtggtgaaacgcgcggcgctggagcccaactatcac
tccatgtacattgagctgattgcgaagctgcactcaaaagacatggattgcgcactgcgc
aaagccactatcggcgcagtgcaccgcctgctgagctcgcagaagatcggcacagactcg
agcgagcgtatcctgctgcgcaacctcggctcctggctcggcagcatcacgctagagaag
aacatccccatcttgcaacaggacctgcacttcaagtcgcttctctgtcggggtattcgc
gagggaaaactggtcccggtcgtctcgttcattacgcgcgtcttgtccagctgcgccaag
tcacgttttttctgcccgccaaacccgtggacaatggcgcagctgtctctgctgatggag
atgtacacgcttccccacctgcgcgtgacgctacgcttcgagctggagctgctgctcaag
tcgctggatcagtcgatgcaggacttggcgcagtacatgcggctgcacgcctcccacgcc
tccaccgagacgcgcctgcgcgatgtgtacgacgagatcaacgtcaacgaaagccctgac
ttccgcgtcggcgaggatgagagcaatgcgcctgcggcggttgtcgcggcacagccgacg
ccggctaccgcatcgccgccggtgccgcagtcactgcgcagcagtgcccgcccgctgcaa
gcgagtgcagagccgttccagcccaaggataaggcgcagaccccgccgtccgaggtgagc
cgtatcatgcagatgctgaacaagccgattcgccctccgatcacgatctcgctgaattgg
gtattttccacgcttagcgatcccagctttggcaacaacgcccaacgtctcacggatcat
cggcttgagattgtggcgcagctgcaggccgtcgtcgacgaggctgtgagctactgcatg
cagcgcagcgtcgccattgccgcccgcacgacggagcgactggtactgaaggactatgca
cgtgacccgttcccggatgacatgctcctcgctggcgatgccatggcccgctcactggcg
tctagcttgagttatgtgatggtgcgcgatgagctaccgctgcttttgcaccgttccatg
acaaaccttctagagcgcattctggccccctacacgcctctcgagcacaaggcgacgatc
cgcgacacccttgtcgcgcgcaacctggagctgtgcatgcgcgcggtggagtacaacgtc
ggcgaggaggcggcgacggccacgagccgcttcctcttcgacgttgcgcgcgagaaggcg
aacgcctttgcagagcaggagcctctgccgctgccaccagaccagatcgaggccgcggaa
ctgctgcgcgtcatgagcgagacgcttgtgccgtctggccggatgcccgccccgcagcgg
gaggtctacgacgacttctacagctgcgtgccgcctgtggccgtgttcaacatggtgctg
cgcactgtagaggaggcggtgtcgaggtaccactcgaacgagaacgccgcgccgctggac
tttgcacagctcgacgccgccaaccagaagccgggtggcctggccgacgacgcgcaggcc
cccatccgccagcacctaagtcgccttatgagcctagtcaccgaggagtcgagcacttac
ttcctcagccctatgctgaacaagctcatgtcgctcgccgtgtcgacggagcggctgaca
aagctggtaaacagcagcgctaagaatgcgcaggccgctgccgctgccgtcgctgtcccc
caccccgacggcgtcccgagcgcggcggaggacccggcgtggcagcaagaagcgctgcgg
atatccgcagcgctgcatcagctgtacctgcgcattctgctgcagtgccgcgagtgtggc
gaagagacgaaccgcgacgagctcacgcggctcttcctgcgccatagccactgctactca
ttctcgaagctgacgacggacctcatccgcatcaagatcctgaagtgcagcgactttgac
gaggccctcgcgaaggccctgaccaacggcacgtccaactatgtcacctttgcgggcgac
atcatcaccgacgtcatcatcaaggagaagctcgtggcgtcgaaggacatgcgccgaaca
cttgtagccctcgatacgatcgcgcggacgcgagcgccacgcgccgcaccggcggcgccg
gcacacacgctcccgtcctatgtcacggagccgcctctgagcaagattgtgccgagccag
attacgaagctcctcgtcccgtgcgactgcgttcgccctggcgaggacgaggccttccag
aaggaggtggggcagctcatgaatgattggattacagtgtggtcgcagaagagccaccgc
tatgccgagaagcgcatcccgtccgtcgagttcgtgaaaacgctccagcagcgccgcatg
ctggacacggctcatctgcagagctttctgagcctgggggttcgctattgtgtggagtac
tacgccaacacaatgcttgcgatggagcgcgcagacggcaacatcacgagcgagactttg
gtggggacgcggcctggcgggccaccaggttaccgcaccccctacaccgcaaagccattc
gtcatgtgcgacggctttgtggagctggtcatggtgctgctgcagtgctgctctctgcga
aacgaggcttcgcacgacttgcgggccgagaccacgctgctgcgccgcgtgctagacgcc
gtgacacgcgtgctgacggagcaccataactatgttgccaaggcccgccctgccccgacg
tggacgctcacggccgacgaacagatcatcccgctctttcagcagcagccgtacgtgcgc
ttgctcagtaacctcgtctactcgcttcaccggctggagatctccacgacgcgcgccatg
tcgaccgagttcacgactgcgttccacgcgtttctgcgccgcgtgcaccccatggagtac
ccggggttcgtgtttggctggctggagatcctggcgcaccggcatatcatcccccgcttc
atgaacgtgcaatcgatgtggcctcactacgtcgacctcctcgccggtgctatgatgttc
gtgaagttcctgacgaagggtaaccgcatctcgcccaacggcctggtcttctacaagtcg
ctgctaaagctcgtgttggtgctcttgcacgactacccgaggttcctgatcgcgcagcac
tacccgctctgcgaggccatctctctctcgtgcgtgcagctgctgaacacggtgctgtgc
tcctttccaccggacaagcgcctgccagaaccgttcccccacgtcgactccaacgatccg
gcgatgctgcaggtactcgacacatccgtgcaagaggcgtgtatcaaggccactttcacc
tccttcaacgtgcagtcgcagctcctggcgaatctgggggccatgatcacaagcgatgat
gtcccggtgcgcgacagcgttctgatggacgttctcagtgacctgacgcaagcctctgcc
aagcgtagtctcatcaacgcggtggtgcaacacatggccatcgtgtacctgcgcacccac
gacaaccgcatccccgcgaacttcgcgaagtcgaacgtgctcacgtgctaccgcttcttg
tgcagccgcctcaacacgaagcggcgctattatatgcttggcgcctgcgccaatcagctg
cggttcccgaacattcagacgaacttctttgcgaatgtggtgctgaacctgttcttgccg
tcgccgagtgtggacgcgcagacgcagacctgtgtgcaggagcagatcacgcgtgtgctg
gccgagaagacggtgattgtgcagccgcatccgtggggcgtgctcaacacctttgtggag
ctgatgcgcgagcccaagtacaagttctgggagacgtccttcatccactacgcccccctt
gactcaatgttcacgaagctgcgtcacacggtgcacacgcggttgagcaaggctggcggt
gccgctgctctcgacggcgcccgtgccgatccggccacttccacgacgaccacctccggg
atcggtgcagcgccgtctgtgtag
DBGET
integrated database retrieval system
