Lodderomyces elongisporus: PVL30_000521
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Entry
PVL30_000521 CDS
T01116
Symbol
SKI3
Name
(RefSeq) Superkiller protein 3
KO
K12600
superkiller protein 3
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_000521 (SKI3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_000521 (SKI3)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PVL30_000521 (SKI3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_8
TPR_2
TPR_22
TPR_14
TPR_1
TPR_12
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
TPR_MalT
TPR_7
RPN7
HrpB1_HrpK
NatA_aux_su
TAtT
UBA_6
COG4_N
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
5235735
NCBI-ProteinID:
XP_001528015
UniProt:
A5DT49
LinkDB
All DBs
Position
1:1461118..1465353
Genome browser
AA seq
1411 aa
AA seq
DB search
MSSLKSFLKQAKGALEQNDPEEALEYANEALKIDSKSYYAYVFQGKAYQLIGDLAKAMQS
FRKATQIEETNVLAWKGCLQLSKSSDDYETFFNVLTSLCKIYIDQGISIADLLQTLREYL
DAHKVKDNDQLFEFYLRSILPGTKLGDLIGTSIENPDFTYKKLLDFKQKQIEKDVVAQVS
KERVKFGKTLSLDQKAKLDAFAWSIYNKADLLELYDAFLNICDDDGLRQKYKEKCLKFKY
ELLKVSPEKQTLISDIRQSVEDMILLKTKSLFCWNLYFDWMDIASLDMLDEEFVIEYLQL
FQNESLGPVLFAFVMSDISPFNKEKIIKELSFPGGEQKRNPSVISKTMPESSEIKELVDD
DENDDNNDFSSLYMPQDEVIDLMLTGYSKAKESVLANRILIHFFIHLREYNTASERCRDG
IRLLAEMQRTFGLDLPKTKIDFLCSLAVVYTYHEAPKNFSRALQLYDKILESDSTNVEAK
VGKGLICVERGALTEARTILESVVEEHPDNLEAKSEYCWCLVKLGQTEKGRSGLQKFIES
VVGGDLHSREVRAIANWRIAQSYMAEKQVQECYKHLILSLKDNDAYAPSYTLLGILFAES
FNDVKRAQKCFYKAFDLDPNEIEAARYLVKHATAENEWDVAQVLAKRVVTSEHSRRLIMR
GGIPDAAWPYRVLGSGALNDQDDAKAVEWFQNALRIDSNDFASWVGLGEAYSNCGRLEAA
SKVFRHALTIDNGDSWTVKYMLGHVLCEMKEFNEGLSFLYAALESQPNEECILSAIYEAN
IENAEKFLQLGFTGRAINAVLKSLGFVKQSLALNKASQKAWKRLGDILRVLSIAQEYIQA
EPLIQVLQIFKNCGWDNDATLSEKYLVSIEDICTAIGVSSNGISTSIATTTDTSTNSKEK
VQAIRKLVVLAAAAGLEHLPLKANRAMKATALYNLGLAYLESFQHNKIEKHREASIKHLK
HAIKIESNNASFWIALGNVYSFTEPLIAQHCYIKGMSLEVKDAGIWVNLAVLYLKHGDYQ
LAQETFMRAQSVTPQDSQPWLGNAMIEELSGDLNKAQAQYTHAFTVSKGRSAVAQLLYAM
SVTSKAKTSINPKDIETAQELSISNQAMHQYLKLYPEELRALRVGVESAERCKDYDSALE
MCQKLCSLYESMYEETEDSDVLEHYLIGKCQMARISLGLQEYDKVIDIVQEVEQFESKSL
VVEANIRICLGLAYYFTGKFEDAVSQLRVLVDSHAQSSEIISLVAQMLYAHDSPQSKQAA
VDQLFAHIEEYGSSSLLVVLLGAISVVENLEEYFEAIKEELSNLSLAEVVADTRRDIPRI
LEEISVREGDKSYNEAWLRSAFLFPSSYQIWRNIDSGIAKKIVDLGDSKITADEYAEAMK
KGGTVRDVQRSLMLNPCDIEAMQQLTSSLLA
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccctcaaaagctttctcaagcaagcaaagggggcattggagcagaacgatccg
gaggaggctctagagtatgctaacgaagcgctaaaaatagattcaaagtcatattatgca
tatgttttccaaggaaaagcttatcaattgataggggacttggccaaggcgatgcaatct
tttcgaaaagcaacgcagattgaagaaacaaacgtgttagcttggaaaggatgtttacag
ttgagcaagagttcagatgactatgaaacattttttaatgttttaacttcgctttgtaag
atatatatcgatcaagggatctccatagctgatctcttgcaaacacttagagagtacttg
gatgctcacaaggttaaggataatgatcaactatttgagttttatttaaggtcgatattg
cctggaactaagctaggagatcttataggcacctcgattgaaaatcctgatttcacatac
aagaaattattggatttcaaacaaaaacagattgagaaggatgtggttgcgcaagtgtct
aaagaacgtgtaaagtttggaaagactctatcgttggaccaaaaagccaaacttgatgcc
tttgcgtggtcaatttacaataaagcagatttgcttgaattatacgatgcatttttaaac
atttgcgatgacgatggattgaggcagaagtacaaagaaaagtgtttaaagttcaagtac
gagcttttaaaagtgtcaccagaaaagcagactttgatactggatatcagacagagtgta
gaggatatgattttactcaagacaaagagtcttttttgttggaatctttactttgactgg
atggatatcgcatctttggatatgttggacgaagagtttgtaattgagtatttacaattg
tttcaaaacgaaagcttgggtccggttctatttgcatttgtgatgagtgacatttcgccc
ttcaacaaagaaaaaattataaaagagctcagttttcctggtggagaacagaaaagaaac
ccatctgttatatcaaaaacaatgccagaactgagtgaaattaaggagctagtggatgat
gatgaaaatgacgataataatgacttcagctccttatatatgccgcaggatgaggtgatt
gaccttatgcttactgggtattcaaaggcaaaagaatctgtacttgcgaataggattttg
atacatttttttatccatcttcgtgagtataataccgcatcagaaaggtgtcgtgatgga
atcaggcttctagcagaaatgcaaaggacatttggtttagacttgccaaaaaccaagatt
gatttcttgtgctctttagctgtcgtttacacgtaccatgaagcaccaaagaattttagt
cgagctcttcaattgtacgataagattttggaatctgactcgacaaatgttgaagccaaa
gttggtaaaggtttgatctgcgtcgaaagaggggcactaaccgaagcacgcacgattctt
gagtctgtagtggaggagcacccggataacttggaggctaaatctgagtattgttggtgt
cttgtgaagttgggccaaactgaaaagggacgatctggtctacaaaagtttattgagagt
gtggttggaggagacttgcatagtcgagaagtgcgagcaattgcaaactggagaatagca
caaagctatatggcggaaaagcaagtgcaagaatgttataagcatttgatcctttcacta
aaggacaacgatgcgtatgctccttcatatacgcttcttggtattttgtttgccgagagc
tttaatgatgtaaagcgagctcaaaagtgcttttacaaagctttcgatttggatcccaac
gaaattgaggccgcaagataccttgtgaaacatgctactgctgaaaatgaatgggatgtg
gcgcaagtgcttgcaaagcgagtggtgacaagtgaacattccagaagattgattatgcga
ggaggtatcccagatgctgcatggccgtacagggtgctaggcagtggagccttgaatgat
caagatgacgctaaagctgttgagtggttccaaaacgctcttcggatagattctaatgac
tttgcgagctgggttgggctaggagaagcatattcaaattgtggccgactcgaggcagct
agcaaagtctttagacatgccctaaccattgataacggggactcgtggactgtgaaatat
atgttgggccatgtgttgtgcgaaatgaaagagtttaacgaaggtttaagttttctttat
gctgctttggaatcacaaccaaatgaagagtgtatcctaagtgccatctacgaggccaat
attgagaatgccgaaaagtttctacaactcggctttactggccgtgcaatcaacgctgtt
ttgaaatctttgggttttgtaaagcaatcgttagctttaaacaaagcttcacaaaaagct
tggaagcgtcttggagatatcttacgggtactttccattgctcaagagtatattcaagcg
gagccattgattcaagttttgcagattttcaaaaattgcggatgggacaatgatgctacc
ttgctggaaaagtatcttgtttccattgaagatatttgcactgccattggtgtttcttct
aatggtattagtactagtattgctaccactactgatactagtactaactcgaaagaaaag
gtacaagcaataagaaagcttgtagttttggctgccgcagcgggccttgagcacctacca
ttgaaagctaaccgtgctatgaaagcaacagcactttacaatttaggattagcatatttg
gagtcttttcaacataacaaaattgagaaacaccgcgaagcttctatcaagcacttgaag
catgcgataaagattgagtccaacaatgcaagcttttggattgctttagggaatgtgtat
agctttacagagcctctcattgctcagcattgctacataaaaggtatgtcccttgaggtg
aaagatgcaggtatttgggttaaccttgcagttctttatctcaaacatggagactatcag
cttgcacaagagacttttatgcgagcacaatcggttactccgcaagattctcaaccttgg
ctaggaaacgccatgatagaagagctttcaggtgatttgaacaaggctcaagcgcagtat
acccacgcatttacggtgtcaaaaggacgttcagcagtagcacaactcttgtatgcaatg
tccgttacttcaaaagcaaaaacttcaattaatccaaaggatatcgaaactgctcaagaa
ttgagtataagcaaccaagcaatgcatcagtacctcaagctttaccctgaggagttaagg
gctttgagagtcggtgttgagagtgcagagcggtgtaaagattatgattcggctttggag
atgtgccaaaagctttgtagcttatatgagtccatgtatgaggaaaccgaagactctgat
gttcttgagcactatttaatcggtaagtgtcaaatggccagaatcagtttgggtcttcag
gaatatgataaagttattgatattgttcaagaggttgagcaatttgagtcaaagtcactt
gtggtggaagcaaatataaggatctgtttaggtcttgcatactactttacagggaagttt
gaggatgcagttctgcaactaagagtgcttgtggactcccatgcacaatcctcagaaata
atttcattagtagcgcagatgttgtatgcacatgattctccacagagcaaacaagccgct
gttgatcagctatttgcacatatagaggagtatggatcttcgtctctacttgtggtgctt
ttaggcgccatttcagtagtggaaaatttagaggaatactttgaagctatcaaagaagag
ttatcaaacttgagcttagccgaggttgttgctgatacacgtcgtgatataccacgtatt
ttagaggagattagtgtacgggaaggagacaagtcttataatgaagcgtggctcagatct
gccttcttatttccctcgagttatcaaatatggagaaatatagatagtggaatcgcaaag
aagattgttgatttgggtgatagtaagattaccgcggatgagtatgctgaggctatgaaa
aagggaggcacggtgcgtgatgttcagcgatctcttatgttgaacccatgcgatatagaa
gccatgcaacaactaacctcgtctcttttagcttag
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