Lodderomyces elongisporus: PVL30_001724
Help
Entry
PVL30_001724 CDS
T01116
Symbol
TRF5
Name
(RefSeq) Poly(A) polymerase
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_001724 (TRF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_001724 (TRF5)
03016 Transfer RNA biogenesis [BR:
lel03016
]
PVL30_001724 (TRF5)
Enzymes [BR:
lel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PVL30_001724 (TRF5)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PVL30_001724 (TRF5)
Transfer RNA biogenesis [BR:
lel03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PVL30_001724 (TRF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
Polbeta
TUTase
DACNH
BOF
Motif
Other DBs
NCBI-GeneID:
5234435
NCBI-ProteinID:
XP_001526920
UniProt:
A5DWL2
LinkDB
All DBs
Position
2:1105880..1107838
Genome browser
AA seq
652 aa
AA seq
DB search
MRDSSKKKRSSTAHGPPVEKRQRTSSNTYESLYEIDGESSSDSEHIFNYDKDTSPEDKNV
INLIDSDEDDKEEKGGEEEKEEEEDDDENGNSSGENQIEIDGDKVEDKEISPSDQEKLIE
STSTSSTTSSTSSTNSPEANDLAKNDDFIEFGFSSSDEDEDEDRDDGNGGINSVAEEIDD
TSRPEDLHTNSQYPWVKNHDHSRQKEIADWLTMEMKDFVNYISPSSEEIVIRNKVVNTLK
TQIALFWPGTEAHVFGSSATDLYLPGSDIDMVVLSDTGDYENRSRLYQLSSFLKAKKLAT
NVEVIASAKVPIIKFVDPDSNIHVDISFERKNGLDAARRIRKWLASTPGLRELVLVVKQF
LRSRKLNNVHVGGLGGYATIIICFHFLRSHPKLSTESMSSLDNLGVLLIEFFELYGRNFS
YDNLIISLDPKTEEPRYLPKGRYSVLNTARNTFAIVVQDPADPNNNITRSSYNLRDLKKA
FGGAYQLLVAKCYELHAASYRARLGQSILGDIIKYKGKERHFRDERHMVVNEALISHEEE
TTSLDGKKIVTKSNDEFYFSDMTDSDETEEYKPQLLKVKSHKTISPTPVTNKAKDTKKLV
ESFLGLEKSEDENDANNDDSEYDPEKSLPPKPKSNLDKDVKRDYWRQKGLEL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgattcctcaaaaaagaagagactgagtaccgcacatggtcccccagttgagaaa
cgtcaacgcacgtcaagtaacacctacgagtcgctttacgaaattgacggtgagagctca
tcagattcagagcacatttttaattacgataaagatactagtcccgaagataaaaatgta
atcaatttgatagacagtgatgaagatgataaagaagaaaaaggaggagaagaagaaaaa
gaagaagaagaagatgatgatgaaaatggtaacagttcaggtgagaatcaaattgaaatc
gatggtgataaagttgaagataaggaaatatcaccttcagatcaagaaaaattaatagaa
tcaacctcaacttcttcaacaacttcatcaacctcatcaacaaatctgccagaagccaat
gatcttgcaaagaatgacgactttattgaattcggatttctgtcctcagatgaagatgaa
gacgaagacagagatgatggaaatggaggtataaactcagtagcagaagaaatagatgac
acctcgagaccagaggacctacatactaattcgcaatatccttgggtgaaaaaccacgat
cattcgcgccagaaagagattgcagattggcttacaatggagatgaaggattttgtgaat
tacatatcgccgtcgagtgaagaaatcgtgattaggaataaagtggtaaacactctcaag
acacagattgcactcttttggcccggaacagaagcacatgtttttggatcgagtgcgact
gatttatacttgccaggctctgatattgatatggttgttctttctgatacaggagactac
gagaaccgttcaaggttgtaccaactttcctctttcttgaaggccaagaaactagccacc
aacgttgaagtgattgcaagtgccaaggtcccgatcatcaaatttgtagatccagattcc
aacattcacgtggatatatcgtttgaaagaaaaaatggtctcgatgctgctaggcgaata
cgaaaatggttagcctcgaccccaggtctaagggagttagtattggtggtaaaacaattc
ttacggtcaagaaaactcaataatgttcatgttggaggtctagggggatacgccaccatt
atcatatgttttcattttttacggctgcatccaaaactctcgactgaatctatgagctca
ctagataatttgggagtattattgattgagttttttgagctttacggaagaaacttttcg
tatgataatttgataatctctttagaccctaaaaccgaggagcccagatacttacccaag
ggaagatattcagtcttgaatactgcgcgaaatacatttgctattgttgtacaggaccca
gcagatccaaacaataacatcacaagatcatcttacaatttgcgggatttgaagaaagct
tttggaggggcttaccaacttcttgttgccaaatgttacgaattacacgcagcatcttat
agagcacgtttgggccaactgatccttggagacatcattaaatacaaagggaaagagcga
cactttagagacgagagacatatggttgttaacgaagcattgattagccacgaggaagaa
acaacaagcctcgatgggaaaaaaattgttacaaaaagtaacgacgaattttatttctct
gacatgacggatagtgacgaaactgaggaatataaaccacaacttttaaaagtcaaatca
cataaaacaatcagccctacacccgtgacaaataaggcaaaagatacgaaaaaactcgtc
gaatctttccttgggcttgagaaatctgaagatgaaaatgatgcaaacaacgatgatctg
gagtatgacccagaaaagctgcttccaccaaaaccaaaaagcaatctcgataaggatgtt
aagagagactattggagacagaaaggattggaattgtaa
DBGET
integrated database retrieval system
