Lodderomyces elongisporus: PVL30_005709
Help
Entry
PVL30_005709 CDS
T01116
Symbol
CDC39
Name
(RefSeq) CCR4-NOT core subunit cdc39
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_005709 (CDC39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_005709 (CDC39)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_005709 (CDC39)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PVL30_005709 (CDC39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_HEAT_N
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
5231281
NCBI-ProteinID:
XP_001524153
UniProt:
A5E5S7
LinkDB
All DBs
Position
8:join(999684..999714,999776..999796,1000347..1007128)
Genome browser
AA seq
2277 aa
AA seq
DB search
MASLYLVYSETALFSPFESPGGKNQRQQQTKVAQVTQQQQGKKQEEKENVARDPELTKAI
INQLCILLLTVDYSTVDSHFKQIRFILSKEVGGNNSQVCFNYYQKLISLIRLGDFSNKKL
TPVEHIFAKELNFIATDLRITDSLLDLFDQQLNFAQKSIVDFVVKFDCDIIFSFILLIRY
NNPSNTEAARAFIRDHSLELSDLLKDRKFPQNYNWSLLLESILNTPYFPFLHKLLILSSL
KAFKLTIEPISKFYQNILKMSFKELITEVGFDDLVPEKLLPSLLQIKPNEVDEGIALVLA
EILIPGSQGINKNAHLQQQTLPEANAKGAQLQASFRAIEAQSGTNKLSINWYEVFNHMQQ
NLFEAGRRYKLPTAVSLTQFLSSLDFKQEPLDIFFNYDWYFDKTLLYLLQTADPAQGAYD
ISLSNNLALCFEEDKATPPQPGRRNILRFINIGKFELKALSGAQAQQVTKHLNEKEVKLN
TFINQQFDHDYRVFPEYVLAAAVSMIERTPFINDLVDTLFGLLMDSDSPTLPKVMRVMSE
TGLAISQLVSYYNSRKTVVAAQKVANVASRIGIINEVIAQFWTTDINSAVSVLVESSFYG
VDIKGELDTKLKDQQFKKPLYIALLDVLNERAQKDYEAFQQHQQREQNPQSASGGIPPSL
SRQLPFLKISTVNTLVEKLKNSSGLIDLKKWKNLQILILTTYPRLINFGSGHDEVILANE
AKSTFFPQEVELEMKEYYSKMYSKAVEIPEVVDALIKMKSSDDPHQQDVFACMIHSLLDE
YKFFSEYPLAALASTSLLFGALLENDLIHGTTLTVALNFIFESCNQPPESKLFKFAVQSL
YNFKSKLHEYPIYCKHLLECQSLATHAKMYQVVKDAANGIPCGGANSATGATQTPTPDVG
PKYQSINYVEQAVGSVQQEEPSEEIKDKLLFAVNNMTMENMRLTEIKSHLQEAYYAWFAD
YLVGDRARAEPNNHKLYSDLVESLADPIFTEYVMNVTMKEVFTIIRNFKDSRSERNQLKN
LGAWLGRITLAIDKPLRRDLIALKFLLVEAYDFKSLPLIIPFVCKILDQAQFSRVFKPPN
PWILGIMSVLAELYEHADLKLQLKFEVEVLLNSFEMKVTDLEQSTIIRNHSSDATALAQM
FGLLPQVGQAQLTSELSRLNLDAGSGSSDSPSSNVPLFPPQAGIKKQLQQFQQPPLSLQQ
QQAQAQAQAQAQVPANSIHAPQPQQVQPQTQQESGWDTSFSQLVGNSVFTQHANLRRAFQ
ASLSRAVRECAIPIMNRVSEAVLVTTEYLIKKDFATEVDVDKFRQSYRRLAQQLAHSMVL
CSGKKILAETIEATMLQLLGNNPNDIPMLELSNAVQANVGLCVDIVDKIATNNITDLIDE
RMRPYILNRERHKFGQPYIENGTPESSLRLPEPLGLSTRGLSAQQLKIYEHFGEFSGVER
SNAPTPLIAQPQPHQPLVQQLPQQLPQHLPQHLQQQQSQQQSQQQQQQQQQQQYQQQQQQ
VLQQSQPHQLQQITQDFPAHQQQSRMLQEDVASVEQLFAIITQYCEKAINLLADVTETKI
ADLPPNHPIMTALTQALSIAQANAIKFPDLLLKAAQYAVNCLFTQAHENSIANEIYVIML
DKLCEFSPSTAKDVTWWLVNSSDQRKFNMPVILSLLKVQLIQPTKLDSSIGALIKESNNP
VVVKFGATLLYSIFTAEDLARPIALRSEFAHTLDALYEYQRLQFNDNDEENKQAKAEVDK
LFEVLGKADPVSKELFAQLGYVFAEWVRLLSHGNEQSKKDASEEDFIAGLVESGILTNPV
HFKSFWKAAIEISVALFGTEHELRSRTQHEAYLSVDCLAILVVRVVMNVENEAHAISYLK
NIIGVVLFNLISEHEEAKAAWNERAYFRFFSSLLSAWNDVSVLDNDATKSLDSQFFQFIG
ECFNSLQPIVLPGFTFAWISLISHRMFLPRLMELPDGEGYAVGVKLLSALFKFQDTYQLK
ENSHDVSNVTFKAINRIFVGLLHEYPDFLVECHYQLIAAAPRGYIQLKNIILSASPKSMT
IPDPFTPGLKVERLPEINDAPKVFYKPMDDLIRAGLKKPVETFLRIPSSSLVRAIYNGLK
LAQPKQSDMFGIPETVNFNHKLVNALVLHVGMNAVAEKSPAGRNSFNSKSSQVALLVDLM
NYGSNEFKYLLISSIANQLRYPNSHTHWFIGIILHFFLSNTLWNTSGSKLAVQEIITRVL
LERRIVNKPHPWGLTIVFLELVKNDDFGFFDLPFVKNSIDEVKTIFDTLADNVKGSN
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgtatctagtgtactctgaaactgctttgttctcaccatttgagagcccc
gggggcaaaaaccagaggcagcaacaaacaaaagtagcacaagtaacacaacaacagcaa
ggaaagaaacaggaggaaaaagaaaacgttgctagagacccagaacttaccaaggctata
atcaatcaactttgcatcttacttttaacagtagactactcaactgttgactcgcatttc
aagcagatcagattcatcttactgaaagaagtaggtggcaacaactcacaagtttgtttt
aattactaccaaaaacttattagtttaatcagactcggtgatttttccaataagaaatta
acaccagtggaacatatttttgcaaaagaattaaattttattgcaactgacttgagaata
accgactcgttactcgacctatttgatcaacagttaaatttcgctcaaaaaagtattgtt
gatttcgtagtcaagtttgattgtgatatcatcttttcttttatcttattaattcgatac
aataatccatcaaacacagaagccgctagagcatttatcagagaccactcattagagctt
tccgatttactcaaggatagaaaatttccacaaaactacaattggagccttttattagag
tcaattttaaacactccatactttccgtttttgcataaactattaattcttagttcatta
aaagctttcaagttaactatcgaaccaataagcaaattttaccaaaatatactcaagatg
tcctttaaagaattaattacagaagttggatttgacgacttagtacctgaaaaattgtta
cccagcttgttgcagattaaaccaaatgaggttgacgagggtattgcattggttctagca
gagatcttgattcctgggtcacaagggatcaataagaatgcacaccttcaacaacaaaca
ttgccagaggctaacgccaagggagcacaacttcaagcaagcttccgagccattgaggca
caactgggcacgaacaaacttagcatcaattggtatgaggtgtttaaccatatgcagcaa
aacctatttgaagcaggtcggagatataaacttccaacagcagttagcttgacacagttt
ttgtcatcattggactttaaacaggagccattagatatttttttcaactacgattggtat
tttgacaagacattactttaccttttgcaaactgctgatccggcgcaaggtgcttatgac
atatccttactgaacaacttggcactttgctttgaagaagacaaggcaacccctccccaa
ccaggaagacgaaatatcttacgtttcatcaatatcggtaagtttgagttgaaagcattg
tctggtgctcaggctcagcaggtgactaaacacctcaacgaaaaagaagtcaagcttaat
acctttatcaatcaacaatttgatcatgattatagagtgtttcctgaatacgtgttggca
gctgcagtctctatgattgaaaggacgccttttatcaatgacttggtcgacacattattt
ggattgttgatggatagcgattcgccgacattacccaaggttatgcgtgtaatgctggag
actggtttggccatttcacaattggtaagttattataatagcagaaagactgttgttgct
gctcaaaaagtagctaacgtggcctcgaggattggtattataaacgaagtgattgctcaa
ttttggacaacagatatcaatagtgcagtaagtgttcttgttgaatcatctttttatggc
gtcgatatcaagggtgaattggatactaaattgaaagatcagcaattcaaaaaaccgttg
tacattgctttgcttgatgttcttaacgaaagagcacaaaaggattatgaagcattccaa
caacatcaacaacgtgaacaaaacccacaatcagctagtggtggtattccaccttctctt
tctcgtcaacttccattcttgaaaattagtacagttaacacgttggtagaaaaattgaaa
aacagcagtggattgattgatttgaagaaatggaaaaacttgcaaatcttgatcttgacc
acttacccaagactcatcaattttggtagtggtcatgatgaagtcatcttggccaatgag
gcaaaatcaacttttttccctcaggaagtggagttggaaatgaaagagtattattcaaaa
atgtacagcaaggcagttgaaattccagaggttgttgatgcattaatcaaaatgaagtct
agtgatgacccccaccagcaagatgtatttgcatgcatgattcattcgcttttggatgag
tataagtttttttctgaatacccattagctgcattggcttcaacttcgttattgtttggt
gcattgttggagaatgatttgattcatggaacaacacttacagtcgccctcaatttcatc
tttgagtcatgtaatcaaccaccagagtcaaagcttttcaaatttgctgtacaatcattg
tataatttcaaatcaaaattgcatgagtaccctatttattgtaaacacttgttggaatgt
caatcattggcaacgcatgccaagatgtatcaagtggtgaaagatgcggcaaatggaata
ccatgtggtggtgctaactcggctacaggtgcaactcaaacacctactcccgacgttgga
cccaaatatcaatctatcaattacgttgagcaagctgtaggatcagtgcaacaagaagag
ccatctgaagaaatcaaggataaattgttatttgcagtcaataatatgacaatggaaaat
atgagattgaccgagatcaagagtcatttgcaagaggcatattatgcttggtttgctgat
tatttggtgggagatagggctagagccgagccaaataaccataaattgtactcggatttg
gttgagagcttggcagatccaatatttaccgaatatgtgatgaatgttactatgaaagaa
gtattcaccatcattaggaatttcaaggactcgagatcagagagaaaccagttgaagaat
cttggtgcttggttgggaagaattactttagccattgataaaccattgcgcagagatttg
attgcattgaagttcctccttgttgaggcatacgactttaagtctttgccattgatcatt
ccattcgtgtgtaagattttggaccaagcacaattttcaagagtgtttaagcctccaaac
ccatggattttaggtataatgagtgttttggctgagttgtacgagcatgctgatttgaag
cttcagctcaagtttgaagttgaagtgttgctcaactcatttgaaatgaaagtaactgat
cttgaacaaagcacaattattagaaaccacagcagtgacgctaccgcattagctcaaatg
tttggtcttcttccacaagttggacaagctcaacttacctcagaattgtcaagattgaat
ttggatgctggtagtggaagtagcgacctgccaagttctaatgttccattattcccaccg
caggctggcattaaaaagcaactacaacaatttcagcaacctccgctttcacttcaacaa
caacaagcacaggctcaagctcaagctcaagctcaagtaccagcaaactctatccacgcg
cctcaaccacaacaagtacaaccgcaaactcagcaagaatctggttgggataccagtttc
agccagttagtgggcaattctgtattcactcaacatgctaatttgagaagagctttccaa
gcttcattgtctcgtgctgtaagagaatgtgcaattcctataatgaatcgagtttccgaa
gctgtgcttgtcaccactgagtatctcattaagaaagattttgccaccgaagttgatgtc
gacaaattcagacaaagttatagaaggttggcgcaacaattggctcatagtatggtttta
tgcagcggtaaaaagattttggctgagactatcgaagctacaatgttgcagcttttggga
aataatcccaacgatattcctatgttggagctcagcaacgccgttcaagccaatgttggc
ctttgtgtcgatattgtggacaagattgccactaacaatattactgatttgattgatgag
agaatgaggccatacattttgaatcgtgaacgccataaattcggtcaaccatatattgaa
aatggcacaccagaatcctcgttaagacttccagaaccattgggcttgagtactagagga
ttgagtgcacagcaattgaagatatacgagcattttggtgagttttctggtgtggaaaga
agcaatgctcctaccccgctcattgcacaaccgcaaccacaccaacctctagtgcaacaa
cttccacaacaattaccacaacacctaccacaacacctccaacaacaacagctgcaacaa
caactgcaacaacaacaacagcaacaacagcaacaacaatatcagcagcagcagcaacaa
gtgcttcaacaactgcaaccacatcaactccaacagattacacaagacttcccggcacat
caacaacaatcgagaatgttacaagaggatgtggcctctgtcgaacagcttttcgctatc
atcacacagtactgtgaaaaggccatcaatcttcttgcagatgttactgagactaagatt
gctgatttaccaccaaaccatccaatcatgacggctctcactcaggcattaagtattgct
caagcaaatgccatcaagttccctgatttgttgctcaaggcagcgcaatatgctgttaat
tgtctctttacacaagcacacgaaaattctatagcaaacgaaatctatgtgattatgctc
gacaaattgtgtgaattttctccctcaacagcaaaggatgtcacttggtggttagtcaat
tcatcggatcaacgtaaatttaatatgccggtaattttatcgttgttgaaagtacaattg
attcaaccaactaaattggattcatctattggtgcattgatcaaggagtcaaacaatcca
gttgttgtgaaatttggtgctacattattgtacagtatatttacagcggaggatttggcg
cgtcccattgcattgagatcagaatttgcccacaccttggatgcattgtatgagtaccag
agattgcaatttaatgacaatgatgaggagaacaagcaggccaaggccgaagttgacaag
ttgtttgaagtccttggtaaagctgaccctgtatcaaaggagttgtttgcccagttgggt
tacgtttttgctgaatgggtaaggttattgtcgcatggaaacgagcagctgaaaaaggat
gcatcagaagaagactttattgctggtttagtcgagtctggtattttaactaaccccgtg
catttcaaatcattttggaaggctgctattgaaatatcagttgctttgtttggtaccgag
cacgagttgagaagccgtactcaacatgaggcttatttgtcggttgattgtttggctatt
ttggtggttcgtgtggttatgaatgttgaaaatgaagctcatgcaatttcgtacctcaaa
aacattattggtgttgtgttgttcaacttgattagtgagcacgaagaggctaaggcggca
tggaatgaacgtgcatatttcagattcttttcatcgttgctatcagcatggaacgatgta
tctgtattggacaatgatgcgacaaagagtcttgactcgcaatttttccaatttattggt
gagtgcttcaactcgcttcaaccaatagtacttcccggtttcacttttgcatggatctcg
cttatcagccaccgcatgtttttgcccagattaatggaattgcctgatggtgaaggctat
gcagtaggtgtcaaattgttgctggcattgttcaagtttcaggatacttatcagctcaaa
gaaaatagccatgatgtgtcaaatgtcacatttaaggcaataaatagaatctttgttggc
ttgttgcatgagtatccagatttcttggttgagtgccactaccagttgatagcagcggcg
ccaagaggctatatccaactcaagaatataatattgtctgcttcacccaagtcgatgact
atacctgatccattcactcctggattgaaagttgaaagattgccagaaatcaatgatgct
ccaaaagtgttttacaagccaatggatgatttgataagagctggtttaaagaagccggtt
gagacatttttgcgtattccatcatctagtctcgtgagagcaatttacaatggattgaaa
ttggcacagcccaaacagtctgatatgtttggcattcccgaaacggttaatttcaaccac
aagttggtgaatgcattagtgcttcatgttggaatgaatgctgtggcggagaagtcgcct
gctggccgcaacagttttaatagcaagagctcacaagttgcattattggttgatcttatg
aattatggttccaatgaattcaagtatttgttgatcagcagtattgcgaatcaattgagg
taccctaacagccatactcactggtttattggaatcatattgcactttttcttgtcaaac
acgttatggaacacttctggatcaaaattggctgtgcaagagattattactcgtgtcttg
ttggaaagaaggatcgttaataagccgcatccatggggacttactatcgtattccttgag
ttggtcaagaatgatgattttggctttttcgatttgccatttgttaagaactcgattgat
gaggtcaagacaatttttgacactcttgctgacaatgtgaagggttcgaattag
DBGET
integrated database retrieval system
