Leucoraja erinaceus (little skate): 129695889
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Entry
129695889 CDS
T09122
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129695889 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129695889 (skic3)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129695889 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_8
TPR_14
TPR_11
TPR_16
TPR_CcmH_CycH
TPR_17
TPR_12
TPR_9
ARM_TT21_C
ANAPC3
PPTA
BTAD
YceG_bac
HAT_Syf1_M
RPN7
Surface_antigen
Motif
Other DBs
NCBI-GeneID:
129695889
NCBI-ProteinID:
XP_055489298
LinkDB
All DBs
Position
3:101410263..101546761
Genome browser
AA seq
1567 aa
AA seq
DB search
MSSKEIKATLKNAREAIRNKEYKEALKHCKAVLKQDKNNYNAWVFIGVAATELDQPDQAK
TAYKKATELDPDQLLAWQGLQNLAEKNNTSDNRHELLGVYQKLMELYESSDKQKWHEVCL
KLVDLYQQEKKYPEAAKTWNRLIQLKQQDGADKQELHQLWKKMIQLFGDKAENQDNETQQ
LLITAFENVLSSLDKIPSDNHQKLSTDYIKFLSKLPHEGDKLKLTCEALIAQYPKSSSLL
QVLAGHFMQTECFSEEAFQCYTRLNKMEPMNGLGLIGQGIKNMQEQKYEEAAKNLTEGLK
HARTTVIAWLYLAEIQLRMHRYEETISSCRQGLKWLENSVHDGNRYQKPKLQFLQAEALV
KSGDADNADIAFGILEQLPNNEPVQLAMKGQAYLNKGQMEQASKISTDLTRSHSDLAESW
ELQGLIDYKQKKYMQAELSFRKALKINEDCGEYYYYLGLTYWFMGEEMRKDKTKTATHLL
KAAKLDTYNGKTFCYLGHYYRDVVQDKSRARGCYKKAFELNNSDEEAGAAAVDLSVELGD
METALAVLRIVTDQSSAGAAKWAWLRRGLYHLRVNQNSQAVADLQAALRADPIDSNCWEC
LGEAYLSRGGYTAALKAFTKANELNPDAVYNIYKIALIKQILGKYADAVAEYTQIIQKSE
NYVPALKGLGECYLMMSRNALKDYLDGRALDSAEQALQYLAGAVQYRPDVSCLWKLIGDT
CTTLHVLSPAKVNVEVHFVLFAQIEKTNVHTLNKSELLSLGGRCYMRALTLMSTSANLWC
DLGVNYYRQAQYLAAHHDTGEENTVHELLEKSLQCLKKSVMLNSKNHQYWNALGVVASCK
GIENYALAQHSFIKSVQVEQNNVVAWTNLGATYLKNESVELAHEAFKVAQSLEPSYVMCW
IGQALIAEAVGSYETMDLFRHTTELGVNTEGAKGYAHWVCATLQDKSNRNSELYKYNIIQ
MNAISAAQIVMSKYTERIRTDPIAFTMLGYLNEYLNLKKQAAEAYNRAVMLLQNAKDNEK
LLLARRNWARALCTAGHYQESIQAYVSNSLTEFDDITGIALAYFKKGQLPESAKAYEKAL
SIAQTEKEKAHILIALAMIEIKNNRMDNAKTLLFKCSMLKEPSVESLQALCALGLLKKDT
TLTTAALNELFKHWDKIASTYETSLLSSGMFSLQSNSLAVQRQASKAVHSNPADPALWTL
LCRVVPQHTPQKAEGGVVAGNVAQILSSHHSKNALLFSAVNQIAAGKHAAIDNNDNALKT
IQKTIHLYPDDPTVWASLMAALHMEKTLSHLNGKHSKLTASEELLVVAITSKIKTEKTMP
AFYLQSLENWSLQQAATGLKEMGRHSDAEAFCSKVLERYPDHPAVFLLLRQIQCEQLLLS
QQQLPDTVLEELKKAVMSNFTSITAWHWLAEIYKSQGLMVAAEMCYRQGLQLSSKQGDTS
GKLSSLLRLAMLALSLSTVKQNHRWTSLVKEATNEAQKICFCPLAGLFQALLQFIVKVGA
RETRRLLERVVYQPGYTESIATVARWYLLRHLWAKNDDTLIEVLLQNAKMKGDSRVEKLY
QKLNESS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaaattaaggctacattgaaaaatgcaagggaagctattagaaataaa
gaatataaagaggcactgaagcattgcaaggctgtattaaaacaagataagaataattac
aatgcttgggtttttatcggagttgctgcaacagaattggaccagcctgaccaggcaaag
actgcatataaaaaggctacagaacttgacccggaccaattgttggcatggcagggttta
caaaatttagctgagaagaataatacatctgataacagacatgagctattgggagtttac
caaaagctaatggaactgtatgaaagttctgataagcaaaaatggcatgaagtctgccta
aaattagttgatctctatcaacaagaaaaaaaatatccagaggctgctaaaacgtggaat
cgattaatacagctaaagcaacaagatggagctgataaacaagaacttcatcagttgtgg
aagaagatgatccagttatttggggacaaagcagagaatcaagacaatgaaacccagcaa
ctgttgataactgcatttgaaaatgttctttcatctctggacaagattccaagtgacaat
catcagaagctttccactgactatattaaatttctgtcaaaacttccacacgaaggggat
aaattaaaactaacttgcgaggctttgatagcccagtatcctaaatcttcatctttgcta
caagtacttgctgggcatttcatgcaaacagagtgttttagtgaagaggcttttcagtgt
tatacaagacttaataagatggaaccaatgaatggactcggcctaataggacaagggatc
aaaaacatgcaagaacagaaatatgaagaagctgcaaaaaacctcactgaagggttaaaa
catgcacgaacaacagttatagcctggctttatctagcagaaattcaattacggatgcac
agatatgaagaaacaatcagttcttgcaggcaaggtctgaaatggttagaaaacagtgtc
catgatgggaacaggtatcaaaaacccaagttgcagtttttgcaagcagaagctctggtc
aaatctggtgacgcagataatgcagatatagcctttggcatcttggagcagcttcctaat
aatgaaccggtacaacttgccatgaaaggtcaagcatatttgaataagggacaaatggaa
caagcatctaagatttcaacagatcttacaagatcgcattctgacttggctgagtcatgg
gaactccaaggccttattgactataagcaaaaaaaatacatgcaggcagaactaagtttc
cggaaagctctgaaaataaatgaagactgtggcgaatattactattaccttggactaacg
tactggtttatgggggaggagatgagaaaagataaaactaaaacagctactcatttatta
aaggctgctaaattggacacgtacaatggaaaaacattttgctacttgggccattactat
cgagatgtagtacaagataaaagcagagcccggggatgctacaaaaaagcctttgagctg
aacaacagtgatgaagaagctggagctgcggctgttgatctcagcgttgaattgggagat
atggaaaccgctctcgcagttctgagaatagtgactgatcagtcgagtgctggagctgcc
aaatgggcgtggcttaggcgaggactttatcacctgagagtgaaccagaattcccaagct
gttgcagacttacaagcagctttgagggcagacccaatagactcaaattgctgggaatgt
ttaggagaggcttatctcagcagaggaggctacactgctgctctaaaggccttcacaaaa
gccaatgaactcaacccagatgctgtgtacaacatttacaagatagccctcatcaagcag
attcttggcaagtatgcagatgcagttgcagagtatacacagataattcaaaagtcggaa
aactacgtgccagctctcaaaggcctaggtgaatgctacttaatgatgtcacgaaatgcc
ctcaaggattatttggatgggagagctttggattcagctgaacaggcacttcagtactta
gctggtgcagtgcaatatcgacctgatgtatcctgtctttggaagctaattggagacaca
tgtaccacactccatgttctgtcaccagcaaaagttaatgttgaagtccattttgttctc
tttgcacagattgaaaaaactaatgtgcacactttaaacaaaagtgagctactttccctt
ggaggaagatgctatatgcgagcccttacgctgatgtctacatctgccaatctgtggtgt
gaccttggtgtgaattattaccgacaggcacaatacctggcagcacaccacgacacagga
gaagaaaataccgtgcacgagttgcttgaaaaatcactgcagtgccttaaaaagtctgtg
atgttgaacagcaaaaatcatcaatactggaatgcacttggagttgttgccagttgcaaa
ggtattgaaaactatgctcttgcacagcattcattcattaaatctgttcaggttgaacaa
aacaatgtagtggcttggaccaacctgggggcaacttatttgaagaatgaaagcgttgag
cttgcccatgaagcctttaaggtagcccagtctttggaaccctcatatgttatgtgctgg
attggacaggcacttattgcagaagctgttggcagctatgagacaatggacttatttaga
catacaactgaacttggtgtcaatactgaaggtgctaaaggttatgcacactgggtgtgt
gcaacactgcaggataaatcaaatagaaattcagaactgtacaagtacaacattatacag
atgaatgcaatatctgctgcacagattgtcatgagcaagtacacagagagaattcggaca
gatccgatagctttcacaatgttgggttatttaaatgagtatttaaacctgaaaaaacaa
gcagcagaggcgtataacagagcagtaatgttattacaaaatgccaaagacaatgagaaa
ctgctgctcgctcgaagaaattgggctcgagccttatgtactgcaggtcactatcaagag
tccatccaggcttatgtgtcaaattcactcacagagtttgatgacattactggaattgcc
ttggcttacttcaagaaaggccaacttccggagagtgcgaaagcttatgaaaaggcttta
agtattgctcagacggagaaagagaaggctcatatcctgattgcgcttgccatgattgag
ataaaaaacaacagaatggacaatgctaagactttactttttaagtgctcaatgctgaag
gagccgagtgtggagagtcttcaggcattgtgtgctctgggactcttgaagaaggatacc
actctcactacagcagcacttaatgagctgttcaaacactgggataagattgcttcaact
tatgaaacatcacttctttcttcaggaatgttttctttgcaaagtaacagtttagctgta
cagagacaggcatcaaaagctgttcatagcaatccagcagatcctgccctttggacatta
ttatgcagagttgttcctcaacatactccccaaaaggcagaaggtggggtagtggctggc
aatgtagcacagatcctcagttctcatcattcaaagaatgctcttttgttcagtgctgta
aaccagatagcagcaggaaaacatgctgcaattgataacaatgataatgcattaaagact
atccaaaagacaatccatctttatccagatgatcccactgtgtgggccagcttaatggca
gcgttacacatggaaaaaacattatctcatttaaatggcaaacattcaaaactaactgca
tctgaagaactgcttgttgtagcaatcacatcaaaaataaagacagagaagaccatgcca
gctttctatcttcaatccctggagaactggtctttgcagcaggctgctactggattaaaa
gaaatgggcaggcattctgatgctgaagctttctgcagtaaagtactagagaggtatcca
gaccaccctgcagtgttcctattgctgagacagattcaatgtgaacagctcttgctttca
caacagcagcttcctgataccgttttagaagaactgaagaaggcagtgatgtcaaatttc
acatcgattacagcttggcattggttggcagaaatatataaatcccagggtttgatggta
gctgcagagatgtgctacagacaaggtttgcaactgtcttcaaaacaaggtgatacgagt
ggcaagttgtccagtctgctccgattagcaatgcttgcactttcactcagcacggtaaaa
caaaaccatcgatggacatcactagtgaaagaagcaaccaatgaagctcagaagatctgc
ttctgtcctttagctggtctattccaagcacttctgcaatttatagttaaagtgggagca
agggagactcgacggcttttggaaagagtggtatatcaaccaggttacactgaaagcatt
gccacagttgcacgttggtacctcctgagacatttgtgggccaaaaatgatgacacactt
attgaggttttacttcaaaatgcaaaaatgaagggtgattccagagtcgaaaaactgtac
cagaagctaaatgagtcatcatga
DBGET
integrated database retrieval system
