Leucoraja erinaceus (little skate): 129705183
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Entry
129705183 CDS
T09122
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
129705183 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
leri04040
]
129705183 (cngb1a)
Ion channels [BR:
leri04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
129705183 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
129705183
NCBI-ProteinID:
XP_055504617
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All DBs
Position
17:15170820..15276308
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AA seq
1390 aa
AA seq
DB search
MLTWIAKVAPHPPQLQTRPDVKDGSPPDEKQKMVEPEKSKNEAGDCSDAGRKEGETGHTA
ASTAFPSSGGGVLFWIAQYASRFIPPHIDNSRLPKGASDSEKNAENKEKEPIEESKAPPP
AAASAPAPVPAPVPEKAPAPVPVSAPAPAPAPETQSSSQPCVGEAPSNQHQQDRDSGGGV
LSWFVQGFNGVLPQPEDKPKSADPAEVTTASKVTKKDPANPQKQELPIETKSQSEIKPPK
EPEVKAEVVVPETSKECSQQAEPRANFPPTVSTDEVLHSSSSGNSVLEWLKQSLEKVVPQ
PASESARVETELTAPENKVPVEEKEPGAKVTEVKEKLPAAVTIIEVAPAERTLDPTMNKE
KQPKSKAITMTSDNNKSVFSWLVQGLGKVVPQPVTKPQLPNEDAGTTIACAAVETPKEMV
LEDVDSDWDEETQYHDAETQTSECEAQVQLTKPAIRIEVTPLSSSQLWNITEEPEGDAEP
VQVCEETGRSEDPPNENPVLLCEEIESDEELQLTGPVQMCEETDSCEDTPAAEPENVCEA
AEGNEDPAAVEPILLDEGTEEDEDHSIVEQTPVTDEALSNEDLPPIPNLDTICPEGIDQT
VQAGCNEETTEDQLIQAVETSPEQEEVLKTELEQEHPPTASGPSVKIEDVDSEVDSLISG
HNKLPRIQSSSSTCHNRTLTVPGAHKTPQRGKPSSHEDEQSQEIPGQAWQSQTNLQVEDS
FRSPQGSTSSITSAIVNERLQVLVKLFKERTERVKEKLIDPEASEDEESPTATPAKRPME
ASLPAADEKKEEMEEEHYCEMICCRFKTAPWIRRIKSLGLPSSVDPFSNPLYVLWLSIVV
LAWNWNVWLIPVRCTFPYQTPDNIYIWLLIDYFCDFIYVMDMLVFQSRLQYVKGGDIITA
RKLMRENYIKTPKFKMDLVSLLPLDILYFKLGFKVLLRVPRLLKYTTFLEFNDRLEAIMS
KAYIYRVIRTTIYLLYSLHINSCLYYWASDYEGIGATKWVYDGEGNSYMRCYYWAVKTLI
TIGGLPEPETVFEIFFQLVNYFMGVLIFSIMIGQMREVVGAATARQTYYRNCMDNTVRYM
NLNTIPRGVQSRVRKWYEFTWESQGMLDESELLEQLPDKMRLDIAIDVNFSIISKVALFQ
GCDRQMVFDMLKRLKSVVYLPGDHVCKKGEIGREMYIIKAGEVQVVGGPDDKTVFVTLRA
GSVFGEISLLSVGGGNRRTANVVAHGFANLFILNKRDLSDILIHYPDSQKLLRKKAKKLL
SKDGGKSVKPEGKGFQHIIPPRPETPKLFHAVLSVVGKYGIKGTFSLIKKKLGESASMQP
RLQPPPSPYHRRSPFTAKKLDETDDEDDDDVISEMIDSSVLIRMSPAHDGRREQILSVEV
PDEEKEKSEK
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgctcacctggatagcaaaggttgctccccacccccctcagctgcagactcggcctgac
gttaaggatggctctccacctgatgagaaacagaaaatggtggaaccggaaaaatctaaa
aatgaagcaggcgactgttctgatgcaggacgaaaagagggtgaaactggccacactgca
gcgtccactgcattccccagttctgggggcggagtcctgttctggattgcacaatatgcg
agcagatttatcccaccacatattgataactcaagacttcctaaaggtgcatctgattct
gagaagaatgcagagaataaggaaaaagaaccaatcgaagagtctaaggcacctccacca
gctgcagcttcagcaccagctccggttccggctccagttccagagaaagcaccagctcca
gttccagtgagtgctcctgctccagctccagctccagagacgcaatcatcaagtcaacca
tgtgttggtgaagctccatctaaccagcatcaacaggacagggactcaggaggtggagtg
ctcagctggtttgtgcaaggattcaatggggtattgccacaacctgaagataaacctaaa
tcagctgaccctgcggaggtgaccacggcatcaaaagtgacaaaaaaggatcctgcaaat
ccacagaaacaagaactgccaattgaaacaaaatctcagtcagaaattaaacctccgaaa
gaacctgaagtgaaggcagaagttgtggtacctgaaacctctaaagagtgcagccagcag
gcagaacctcgagcaaactttcctcctacagtctcaactgatgaagtgcttcactcatct
tccagtggcaacagtgtgcttgaatggctgaaacagagtctggagaaagttgtcccacag
cctgcatctgaatcagccagagtggaaactgaattaactgccccagaaaacaaggttcca
gtggaagagaaggaaccaggtgcgaaggttacagaggttaaagagaaactgccagccgct
gtcaccatcatagaagttgcccctgcagaacgcaccctggatcctacaatgaacaaagag
aaacaaccaaagtccaaagcaattactatgaccagtgacaacaataaaagtgtcttcagt
tggctagtgcagggccttgggaaagttgtgccacagccggtcaccaaaccccagttacca
aacgaggatgccgggactactattgcatgtgctgcagtggaaactccaaaggagatggtg
ttggaagatgttgattctgattgggatgaagagacacagtaccatgatgctgaaactcaa
accagtgagtgtgaggcccaggtgcaactcacaaaaccagccataagaattgaagtgaca
ccgctgagttcaagccagctgtggaatatcacggaggaaccagaaggggatgcagaacct
gtgcaagtgtgtgaagaaacagggaggagtgaggatccacccaatgaaaacccagttttg
ctgtgtgaggaaatcgaaagcgatgaagaactgcaattgacaggaccggtgcagatgtgt
gaagaaaccgacagctgtgaggatacaccagcagcagaaccggaaaatgtgtgtgaagca
gccgaagggaatgaggatcccgcagccgtggagccaatcctgttggatgaaggaaccgag
gaagatgaggatcactcgattgtggagcaaacaccggtgactgatgaagctctgagcaat
gaagacctgccaccaattcctaacttggataccatctgccctgaggggatcgaccagact
gtacaggcaggatgtaatgaagaaactacagaagatcaattaatacaagctgttgaaact
agtcccgaacaagaggaagttctgaagactgagttggaacaagaacatcctcctactgcc
tctgggccttcagtcaaaatcgaagatgtggattctgaagtggattctttaatatcagga
cataacaagttgccacgaatccaatcatcctcttcaacatgccacaatcgaacacttaca
gtgcctggcgcccacaagacaccacaaagagggaagccttcttcccacgaagatgagcag
tctcaggagatacccggacaagcttggcagagccaaaccaatcttcaggttgaagatagt
tttagatcgccgcagggttcaacttcaagtattaccagtgctattgttaatgagcgcctc
caggtattagttaaactctttaaagaaagaacagaacgggtcaaagaaaagctaattgac
cctgaggcatctgaggatgaggaaagtccaacagcaacacctgcaaagaggcccatggaa
gcctctctcccagctgcagatgaaaagaaagaggagatggaagaggagcactactgtgaa
atgatatgctgccgatttaaaacagcaccttggatcagacggatcaaatcattggggctt
ccatctagtgttgatcctttcagcaatccattatacgttctgtggttatccatcgtagta
ttagcctggaattggaatgtttggctaatccctgtgcgttgcacctttccctatcaaaca
cctgataacatctatatatggcttttgatcgattatttttgtgatttcatttacgtgatg
gacatgcttgttttccagtcccgcctccagtatgtaaaaggaggagacattataacagca
aggaaacttatgagagaaaattacataaaaaccccaaaatttaagatggatttggtgtct
cttttgcctttggatatattgtattttaaactaggcttcaaagtgttgttgagagttcca
cgcctcttgaagtacacaacctttcttgaatttaatgaccgactggaagcaataatgagc
aaagcttatatttacagagtgataaggaccacaatatatttactgtacagcctccacata
aacagttgtttatactattgggcatctgactacgagggcattggagccacaaagtgggtt
tatgatggtgaggggaacagttatatgaggtgctattactgggctgtgaagactctgatt
acaattggagggctacctgagccagagactgtgttcgaaattttttttcaacttgtcaac
tatttcatgggagtcctcatcttctccatcatgattggtcagatgagagaagtggtgggg
gcagctactgctcgacagacatattatcgaaactgtatggataacacagtgaggtatatg
aatctgaacacaattcctagaggagtccagagccgagtgcggaagtggtacgaatttacc
tgggagtcacaaggaatgcttgatgaatcagagctgttggaacaactccctgataaaatg
aggctggacattgccattgacgtcaacttcagcatcatcagtaaagttgcactctttcag
ggctgtgacagacagatggttttcgacatgctgaagcgactcaaatcagttgtatatttg
ccaggagaccacgtatgtaaaaagggagagattggaagagaaatgtacataattaaagct
ggcgaggtccaggttgttggtggccccgatgataagaccgtgtttgtgactctgcgagca
ggctccgtttttggtgagatcagtttgctgtcagtgggaggtggaaatcggcggactgcc
aacgtcgttgctcatggatttgcaaaccttttcatcctcaacaagagagacttgagtgac
attctgatccactacccggattctcagaaacttctccgaaagaaagctaagaaacttctt
tctaaagatggtggaaaatcagtaaagccagaaggaaaaggattccagcatatcattcca
cccagaccagagactcctaaattattccatgcagtcctctcagtagtgggtaaatatgga
atcaaaggaacattctctcttattaaaaagaaacttggagaatctgccagcatgcagcca
agactgcagcctcctccctccccttaccatcggcggtcaccttttacagcaaaaaagctg
gatgaaactgatgatgaagatgatgatgatgttatttcagaaatgatagattcctctgtc
ttgatcaggatgtctcctgctcacgatgggagaagggaacaaattctgtccgtggaagtt
cccgatgaggaaaaagagaagtcggaaaagtga
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