Leucoraja erinaceus (little skate): 129705238
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Entry
129705238 CDS
T09122
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129705238 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129705238 (cnot1)
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129705238 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129705238 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF2891
Motif
Other DBs
NCBI-GeneID:
129705238
NCBI-ProteinID:
XP_055504697
LinkDB
All DBs
Position
17:complement(18919998..19065049)
Genome browser
AA seq
2083 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHRGSHVFRMADISGIYVENLVIGRNTA
EVEEWGEIVNRHGPEADRYLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNF
ISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVILGLALLNSSSSDLRAFALQ
FVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFL
KTLCRDFPQERCPVVLAPLLYPEKRDILMDRILSDSGGIVKTTMDSSLADFMQEVGYGFC
TSAEECRQIILQFGVREVTASQVARVLGMMARTHSGLTDGISLQSISAPGSGIWSDGKDK
TDSAQAHTWNVEIFIDVVKDVNPNLNFKEVTYELDHLGFILRDSKGLQIVVYGIQKGMGI
EVFPVDLIYRPWKHAEGQLSFIHHSLMNPDVFCFADYPCHSVVTDILKAPPEDDNREIAT
WKSLDLIETLLRLSELGQYEQVKQLFNFPIKHCPDMLVLSLLQINPTWHTLRHELISTLM
PIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDL
KAVVGSEMDFSSLGWMSMVPTTRKKIDSIQGKALSMLLNGTPFAFVIDLAALASRREYLK
LDKWLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQ
ACAGSVSQELSETILTMVANCGNVMNKARQPPPGVMPKVRAPSTSSIETMSPVQIDPLSG
MASLTIGGPAASLTPSIQGFTANLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGTLPSQI
PGSLGTGSLTGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQVWPEAN
QHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFE
EYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAA
LDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIAL
AQAQAQAQAQNKTPMARQVSAIVTTSTTTTVTKATTVTRPTGVSFKKDVPPSINTTNIET
LLVATDQGERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMK
RVSIEPNFHSLYSNFMDTLKNPEFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGH
WLGMITLAKNKPILHIDLDVKSLLLEAYMKGQQEMLYVVPFIAKVLESSVRSMVFRPPNP
WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKDKEKLTSLEEQLS
APKRESKIPEELPVVVTTAASVTPATTTTCTATGPPQPQFSYHDINVYSLAALAPHITVN
PNIPLFQAHPQLKSYVRQAIDRAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRM
RVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRAASPQQREMMEQAAAQIAQ
DNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQI
RLKVGGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCIT
ELEQHLHAIPPSLAMNPQAQALRNLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSGAD
PDLLLRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVDAVELLIRHHLV
NMQQYDIHLAQSMENGLNYMAVAFAMQLVKILLVDERSISHVTEADLFNTIETLMRISAH
SRGNAPEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQ
QHNPTANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQD
HEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFW
NT seq
6252 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccaacaggagatctctcatagaggaagccatgtgttc
aggatggcagacatctcgggcatctatgtggaaaatctcgtcatcggaagaaatacagca
gaagtggaagaatggggagagattgtgaacaggcacggccccgaggcagacagatatttg
ttacgctgtctattctcgcatgtggatttcagtggcgatggtaaaagtagcggcaaagat
ttccatcagacgcagtttctgattcaggagtgcgcgtcgctgattaccaagccaaacttt
atctcgacgctgtgttacgccattgacaatccattgcactatcagaagagtctgaaacct
tcaccccacctgtttactcaacttagtaaagtgctcaagttaagcaaagtccaagaggtt
atcttaggcctcgccttgctgaattcttctagctcagatctgcgagcgtttgctctccaa
tttgtgaaacagaagcttcctgatcttctgcgatcctacattgacgcagacgtgagtggg
aaccaagaaggtggctttcaggatattgcaatagaggtcctgcacctgctcctgtcccat
cttctttttgggcaaaaaggagcatttggtgtcggacaggaacagattgacgctttcctt
aagacattgtgcagagattttccgcaagagcgttgtcctgtggtgcttgcaccactgcta
tatcctgaaaaacgggacattctgatggataggattttgtctgattcgggagggatagtg
aaaacgacgatggacagctcactagcagattttatgcaagaagtaggctacggcttttgt
acaagcgctgaagaatgccgtcagatcattttgcagttcggagttcgggaagtgacagct
tctcaggttgccagggtattgggaatgatggctcggacgcattcaggcttgactgatggc
atttccttacaatctatctcagcccctggaagtggaatctggagtgatggaaaggataaa
actgattctgcacaggcccatacttggaatgtagaaatatttattgatgttgtgaaagat
gtgaatccaaacctaaattttaaggaggtgacatatgagctggatcatctaggattcatc
cttcgtgacagcaaaggtctgcaaattgtagtatatggaatccagaaagggatggggatc
gaagtctttcctgttgatctcatttaccggccatggaaacatgcagaaggacagctctcc
tttattcatcactcattaatgaacccagatgtcttctgttttgctgactacccatgtcat
tctgttgtgacggacattttgaaagcccctccagaggatgacaaccgggaaattgctaca
tggaaaagcttggacctcattgagacgttactgcgcctttcagagcttggacaatacgag
caggtcaaacagctcttcaacttccccatcaaacactgtccagatatgttggtgctgtcc
ttactccagatcaatccaacctggcacactctgcgacatgagctgatttccacactgatg
ccaattttcctgggcaatcatccgaattctgccattatcttgcactatgcgtggcacgga
cagggtcaatctccctcaatccgacaactgatcatgcacgcaatggcagagtggtacatg
cgtggtgagcagtatgatcaggccaagctctctcgcattctagatgtagctcaagacttg
aaggcagtcgtcgggagtgagatggacttctcttcgcttggctggatgagtatggtacca
accacacgcaagaaaattgacagcatccagggcaaggccttgtctatgctgctaaatggt
actccgtttgcctttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaa
cttgataaatggttgactgataaaatccgcgaacatggggaaccatttatccaggcatgt
gttacgttcctgaagagacggtgtccttctataatgggtgggctggctcctgaaaaggaa
caacccaagagtgctcaacttcctcctgaaacactggctaccatgctggcttgcctacag
gcttgtgcagggagtgtgtctcaggagctatcggagactattcttacaatggtggctaac
tgtggcaacgtcatgaacaaagcccgccagccacctccaggagtaatgcccaaggtccgc
gcacctagtaccagcagtatagaaaccatgtcgcctgtacagattgatcctttgtctggc
atggcttcattgacaattggtggaccagctgcatccctcactccgagtatacagggtttt
acagctaacctgagttctgcattcaacaccccacaatcaccagcgaaagcctttcctcca
ctttcaacaccaaaccagacaactcccttcagtggtatcggcactcttccgtcccaaatt
ccaggaagtttgggcacagggagtttgactggcatgggaactggtggacttgcactacca
actgtgaacactgacccttttgggcagcgaaagatgagcacatctggactgaacccacaa
acattccagcagagtaagatgaaaccttctgacctttctcaggtatggccggaggcaaat
cagcactttagcaaggagattgatgatgaagcaaacagttacttccagcgaatttacaac
catccaccccatcctaccatgtctgttgatgaggtactggaaatgctgcagaggtttaag
gattccactattaagcgtgaaagggaagtttttaactgcatgcttcgtaatctgtttgaa
gagtaccggttcttcccccagtatccagataaagagctgcacatcacagcctgcctattt
ggaggaattattgagaaaggcctggtcacatatatggcattgggacttgcactgcgctat
gttcttgaggctttgcgtaaaccgttcgactccaagatgtactactttggtattgctgca
ctagacagatttaaaaacagattgaaggactatcctcagtattgtcaacatttagcttct
attggccactttttacagtttcctcatcatttacaggagtacattgagtatggccagcag
tccagagatcctcctgtgaaaatgcagggtagcattacaactcctggcagtattgcttta
gctcaggctcaggctcaagcgcaggctcagaataagacccctatggccagacaggtcagt
gccatagtaaccacttccacaaccaccacagtcaccaaagcaacgacagttaccaggccg
actggagtgagctttaagaaagatgtaccgccctctattaacacaacaaacatagaaaca
ttgttggtggctacagaccagggcgagagaatagtggaaccacctgagaatattcaagaa
aaagtagcattcatcttcaacaacctctcacagtccaacatgacacaaaaggtggaagag
ctaaaagagactgtgaaggatgagtttatgccctgggtatctcaatatttggttatgaag
cgggttagcattgaaccaaactttcacagtctttactcaaactttatggatacactaaag
aaccccgagtttaacaaaatggtgctcaccgaaacatacagaaacatcaaggtactgcta
acatcagacaaggctgcggcaaacttttcagaccgatcgttgttgaagaacctgggacac
tggttgggtatgatcaccctggccaaaaacaaacccatcttgcacattgatttggatgtg
aaatcattgctgctggaagcttacatgaaaggtcagcaagagatgctctacgtcgtcccg
tttattgccaaagttttagagtccagcgttaggagtatggtttttaggcctccaaatcct
tggacaatggctatcatgaatgtattagctgagctacatcaagagcacgatttgaagtta
aacctaaagtttgagatcgaagtcttgtgtaaaaatctggctttggatatcaatgacttg
aagcctggaacgttattgaaggacaaagaaaaattgacaagcctagaagaacagctatca
gctccaaagagagagtccaaaatacctgaggagctaccagtagttgtcaccactgctgca
tcagtgactccagcaacaactaccacatgtaccgccactggacctccacagccacagttc
agctatcatgacatcaatgtatattcactggctgccttggctcctcacattacagtcaat
ccaaatattcctttgttccaagcccatccacaactgaaatcatatgttcggcaagcaata
gaccgtgctgtgcaggagcttgttcatcctgtcgttgaccggtcaatcaaaattgccatg
accacctgcgaacagatagtccgaaaagactttgccctagattctgaggaatcacggatg
cgagttgcagcacaccacatgatgcgtaacctgactgctggaatggccatgattacgtgc
agggagcctttactaatgagcattgctacaaacctaaagaacaactttgccactgctcta
cgggctgcatctccacaacagagagagatgatggaacaagcagctgcccagatagcacaa
gacaactgtgagctagcatgttgttttattcagaaaacagctgttgaaaaagcaggtcct
gaaatggataaacgacttgcaacagaatttgaacttcggaagcatgccagacaggaaggt
cgacgatactgtgatcctgtagtactgacctaccaggctgagcgtatgcctgagcaaatc
agattaaaggtgggtggtgtagatcctaaacaactggctgtgtacgaagagtttgcacgc
aacatcccaggatttctacccagcaatgacatttcacagcccacaggcttcttggccaag
cccatgcagcaagcttgggcaactgacgatattgcacagatttatgacaagtgcatcaca
gaattggagcaacatctgcatgcaattccaccatctctggccatgaacccccaggctcag
gcacttcgcaatttattggaagccgtggtaatggccaggaattcacgtgatgctattgct
gctcttggcctcctgcagaaggccgtggagggactgctggatgccacgagtggtgctgac
ccagatctcttacttcgatacagagaatgccatttgttggttttgaaagcgctgcaggat
ggacgtgcctatggatctcagtggtgtaacaataaaatcactaggtgcctaattgagtgc
cgtgatgaatacaagtataatgtggatgctgtggaattgctcattagacatcatctagtg
aacatgcaacagtatgatattcacttagcccagtcaatggagaatggcttgaactatatg
gctgtagcttttgccatgcagttggtaaagattctcttggtggacgagagaagcattagc
catgttaccgaagcagatttattcaacactattgaaacacttatgaggatcagtgctcat
tccagaggaaatgcacctgaaggattgccccagctcatggatctccttagagctaactat
gaagctatgatggatcgtgcacatggaggccccaactttatgatgcattctgggatatct
caggcctcagaatatgatgatccaccagggcttcgggagaaagctgagtatttactgagg
gaatgggtaaacctttaccactctgcagcagctggacgggacagcaccaaagcattttca
gcctttgttgggcagatgcaccagcagggaattttgaagactgatgacctgattacgcgt
ttcttccgcctatgcactgaaatgtgtgttgagattagttaccgtgcacaacaggaacag
cagcacaatcccactgccaatcctacgatgatcagggccaagtgctatcacaaccttgat
gcttttgtcagattgatagccctgctggttaaacactctggggaggctaccaacactgtc
actaaaatcaatcttctcaataaggtactggggattgttgtcggagtactattgcaagat
catgaagtacgtcagagtgagtttcagcagctgccatatcatcgtatcttcatcatgttg
ttgctggagttaaatgcccctgagcatgtgctggaaactatcaatttccagactctgact
gctttttggtaa
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integrated database retrieval system
