KEGG   Leucoraja erinaceus (little skate): 129707185
Entry
129707185         CDS       T09122                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129707185 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129707185 (cstf1)
Messenger RNA biogenesis [BR:leri03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     129707185 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_HPS5 Beta-prop_NWD2_C B-prop_COPA_B_2nd Cytochrom_D1 Beta-prop_WDR75_2nd Frtz DUF7099 Beta-prop_SPT8 VPS8_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 129707185
NCBI-ProteinID: XP_055507969
LinkDB
Position
21:complement(5868391..5887805)
AA seq 431 aa
MYRPKVTLKDRQHLYRLIIGQLLYDGYMNIASNLINEIKPPSVCSPSEQLLHLAKLGMEN
DDNTVQYAIGRSDTVAPGTGIDMEFDADVQTMSPEAAEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSKDYTLKLFDYSKPSAKRAFKYLQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSSNPRDQHKDAICAVSYNPSANTYVTCSKDGNIKLWDGVSNRCITTY
EKAHDGAEVCSIMFSRNSKYVLSSGKDSIVKLWEISTGRTMVKYTGAGLSGRQTHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSSTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatcgacccaaagttactttaaaggaccggcagcacctttaccgacttattattggc
caattactttatgatggatacatgaacattgcatcaaatctcataaatgagatcaagccg
ccatcagtttgctcaccctctgagcaactactacatcttgccaagctcggaatggagaat
gatgacaatactgttcagtatgctattggacgctcagacactgtggctcctggaacaggt
attgatatggaatttgatgctgatgtccagacaatgtccccagaggctgctgagtatgag
acatgctatgtgacatcgcacaaaggaccgtgtcgcgtggctacctacagccgtgatgga
cagctgattgctacaggttcggctgatgcatccatcaagattctggataccgagaggatg
ctagcaaagagtgccatgcctattgaggtcatgatgaatgagacagcacagcaaaacatg
gagaaccatcctgtaattcgcacgctctacgatcatgtggacgaagtcacgtgccttgct
ttccaccccacagaacaaattctagcatcggggtcaaaggactacacactaaagcttttt
gattattccaaaccttctgccaaaagggcattcaagtatctacaggaagcagaaatgctg
cgctccatctcttttcatccttctggagattttattcttgtgggtacacagcaccctact
ctgcgattgtatgacatcaacacttttcagtgctttgtgtcgagcaatcctcgtgatcag
cataaagatgcaatctgtgcggtgagctacaatcctagtgccaatacatatgtgacttgc
agcaaagatggcaacatcaagctctgggatggcgtctcaaaccgttgcatcacaacgtac
gagaaagcccacgacggtgcagaggtgtgctccattatgttctcaagaaattcaaagtat
gttttgtcaagtggaaaggattctattgtgaaactgtgggaaatatcaactggacgcaca
atggtcaaatatacaggagcaggattgagtggtaggcaaacacaccgcacccaggcggtt
ttcaaccacactgaagattacgtgcttctccctgatgaaagaacgataagcctttgttgc
tgggattcgcgtacagctgagcgcaagaacctcctgtctctaggtcacaacaatattgtc
cgctgcatagtgcattcacctacaaatcctggttttatgacatgtagcgatgacttcagg
gcaagattctggtatagaaggtccagtactgattga

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