Leptolyngbya sp. O-77: O77CONTIG1_02746
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Entry
O77CONTIG1_02746 CDS
T04251
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03030
DNA replication
let03410
Base excision repair
let03420
Nucleotide excision repair
let03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O77CONTIG1_02746 (ligA)
03410 Base excision repair
O77CONTIG1_02746 (ligA)
03420 Nucleotide excision repair
O77CONTIG1_02746 (ligA)
03430 Mismatch repair
O77CONTIG1_02746 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
let03032
]
O77CONTIG1_02746 (ligA)
03400 DNA repair and recombination proteins [BR:
let03400
]
O77CONTIG1_02746 (ligA)
Enzymes [BR:
let01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O77CONTIG1_02746 (ligA)
DNA replication proteins [BR:
let03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O77CONTIG1_02746 (ligA)
DNA repair and recombination proteins [BR:
let03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O77CONTIG1_02746 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O77CONTIG1_02746 (ligA)
MMR (mismatch excision repair)
DNA ligase
O77CONTIG1_02746 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O77CONTIG1_02746 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
HHH
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BAU42924
LinkDB
All DBs
Position
3055715..3057808
Genome browser
AA seq
697 aa
AA seq
DB search
MAANPSKPATASAQTAPAQRAAELRNLLNQASYEYYVLDAPQLPDAVYDQLYRELQDLEA
ADPALISPDSPTQRVGDRPSSQFTSVRHNIPLYSLENAFNLEEVATWDTRWRRYYATVAD
EPPTPPDSAYVCELKIDGSALALTYENGLLVRGATRGDGVTGEDITPNVRTIRSIPLRLK
GENLPPVVEVRGEAFLPLDVFQQINQEREEAGEALFANPRNAAAGTLRQLDSRIVARRRL
DFFAYTLHLAGDGDFPKPASQWEALDLLQTLGFRVNPNRKLCESLAEVRQFADHWEQARF
DLPYLTDGLVIKLNGLALQERLGFTQKFPRWAIALKYPAEEAPTVVQGISVQVGRTGAVT
PVAELAPVQLAGTTVARATLHNADFIAALDVRVGDTVIVRKAGEIIPEVVRVLPELRPAG
AEPFQMPTHCPVCGQPLVRPEAEAVTRCVNSSCPAIVRGSLVHWASRQALDINGLGEKWV
QQLGDRGLLNSVADLYDLTAEQLIDIDRMGKKSAENLVRAIAQSKTQPWWRVLFGLGIRH
VGAVNAQTLAEAFPTVEALAAAEESDIAAVYGIGPEIARSVYQWFRVPANQALVERLRAA
GLTLAGETRPTPDGPQTLAGKTFVLTGTLPTLKRDEAAELIKAAGGKVTSSVSKKTDFVV
VGEDAGSKLEKAIALKITQLSEADLLNLLSNAEEAPT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccaacccttctaaacccgcaaccgcttctgctcaaaccgcgccagcgcagcgg
gccgccgagctgcgaaacctgctgaaccaggccagctatgaatattacgtgctggatgcg
ccgcagttgcccgatgcggtgtatgaccagctttatcgagagcttcaggatctggaagcg
gctgatccagcgctgatttcgcccgacagccccacccagcgcgtgggcgatcgcccctcc
agccaattcacctccgtccgccacaacattccgctctacagcctggagaatgcttttaac
ctagaagaagttgctacctgggacacccgctggcgacgctattacgccaccgttgccgat
gagccgcccacaccgcccgactcggcctatgtttgcgagctaaaaatcgacggctctgcc
ctggcgctgacctacgaaaacgggctgctggtgcgcggggcgacgcggggcgacggcgtg
acgggggaagacattacgcccaacgtgcggacgattcgctcgattccgctgcggctgaag
ggcgagaacctgccgcctgtggtggaggtgcggggcgaggcgtttttgccgctggacgtg
tttcagcagattaaccaggagcgcgaggaagcgggcgaggcgctgtttgccaatccgcgc
aacgcggcggcgggaaccctgcgccagttggattcgcgaattgtggcacggcgacggctc
gacttttttgcctacacgctgcatcttgcgggcgacggcgattttcccaaacctgcatcc
cagtgggaagcgctggatctgctgcaaacgctcggctttcgggtgaatccgaaccgcaag
ctgtgcgaatccttggcggaggtgcgccagtttgccgaccactgggagcaggcccggttt
gacctgccctacctcaccgatgggctggtgatcaagctgaacgggctggcgttgcaggag
cggctgggctttacccaaaagtttccgcgctgggcgatcgccctcaagtatcccgctgag
gaagcgccgaccgtggtgcagggcatttcggtgcaggtggggcgcacgggcgcggtgact
ccggtggcagagctggccccggtgcagcttgcgggaaccaccgtggcgcgggccaccctg
cacaatgctgatttcatcgcggcgctggatgtgcgcgtgggcgacacggtgattgtgcga
aaggcgggcgaaattattcccgaagtggtgcgcgtgctgccggaactacgacccgccggg
gcagagccgtttcaaatgccaacccattgcccggtgtgtggccagccattggtgcgcccg
gaggcggaggccgttacccgctgtgtcaattcgtcctgtccggcaattgtgcgcgggtcg
ctggttcactgggcctcgcggcaggcgctcgatatcaacgggctaggcgagaagtgggtg
cagcagttgggcgatcgcggcttgttgaacagcgtggccgacctgtacgacctgacggcc
gagcaactgatcgacatcgaccggatgggcaaaaaatccgccgaaaatctagttagggcg
atcgcccaatccaagactcaaccctggtggcgcgtcctatttggtctgggtatccggcac
gtcggcgcagtcaacgcgcaaacgctggccgaagcctttccaaccgtcgaagccctagcc
gccgctgaagaatcggacattgctgctgtctacggcattggcccagaaatcgcccggtcg
gtttatcagtggttccgcgtgcctgcaaaccaggctctggtggagcggctgcgggcggcg
gggctgacgctggcaggcgaaacgcgccccacccccgacgggccccaaaccctcgcaggc
aagaccttcgtgctgacaggaacgctgcccacgctgaaacgggatgaggctgctgagttg
attaaagcggcgggcggcaaggtgacgagttctgtgagcaaaaaaaccgatttcgtcgtc
gtgggtgaagacgcagggtctaagttggaaaaggcgatcgccctaaaaatcacccaattg
tcggaagcagatctcctcaatttactgtcaaatgcggaggaagcgccgacgtaa
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