Laceyella sacchari: C1X05_01275
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Entry
C1X05_01275 CDS
T05304
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lfb
Laceyella sacchari
Pathway
lfb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1X05_01275 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfb03021
]
C1X05_01275 (rpoB)
03400 DNA repair and recombination proteins [BR:
lfb03400
]
C1X05_01275 (rpoB)
Enzymes [BR:
lfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1X05_01275 (rpoB)
Transcription machinery [BR:
lfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1X05_01275 (rpoB)
DNA repair and recombination proteins [BR:
lfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1X05_01275 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AUS07622
LinkDB
All DBs
Position
249740..253288
Genome browser
AA seq
1182 aa
AA seq
DB search
MAGKMIPCGRRQRRSYARINEVLELPNLIEIQQKSYDWFLDVGLREMFRDISPIEDFTGN
LVLEFIDYSLGEPKYTVEEAKDHQVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYYNTKADKNGKTTYTATVIPNRGAWLEFETDAKDIIY
VRIDRTRKIPVTVLLRALGFSSDAEIIDLLGDDEYIRNTLDKDNTGNTEKALIEIYERLR
PGEPPTAENARSLLYARFFDPKRYDLAAVGRYKINKKLHIKNRLLNQKLAEPVVNPETGE
ILAETGTVLERRVLDKLLPYLTGEKAFGRKEHKVRGGVPDDGPISLQAVHIFAPNDESKV
TKVISNAEVSDEIKHITPSDIIASISYFVNLLYGVGSTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDANAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARVNEY
GFIETPYRHVDPDTGQVTDRIDFLTADEEDNYYVAQANAPLNEDNTFADDMVTVRHRSEI
INVPRDRVDYMDVSPKQVVSVATACIPFLENDDSNRALMGSNMQRQAVPLLRPEAPFIGT
GMEHVAARDSGVMVRAKRPGTVVRVSADEIWVRQEQEIDGRLIEGDIDKYKLTKFSRSNQ
GTCINQRPVVRTGEKVKVGDVLADGPSTEQGEMALGRNVVVAFMTWEGYNYEDAILLSEK
LVKEDVYTSIHIEKLESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEIKPGD
ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGQDGIVVDVKVFTRENGDE
LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARIMPEEDMPFLPDGTPVQVVLNPL
GVPSRMNIGQVLEVHLGMAAKALNLHMATPVFDGATENDVFETLKEAGLDEDGKTILYDG
RTGEPFENRVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAHTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGM
DVKILSEDEQEIEMRELDEDEESASDKLGFDLLEEDTAHSNS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggctggtaaaatgatcccatgtggtcgtcggcaacgtcgtagctatgctcgcattaat
gaggttctcgagctgccgaatctgattgagattcagcaaaagtcttatgactggttcctt
gatgttggtttgcgtgaaatgttccgcgatatttcgccaatcgaggattttaccggtaac
cttgtacttgagtttatcgactatagcctgggtgaaccaaaatacaccgttgaagaggcg
aaagatcatcaggtgacctatgccgcaccgcttcgtgtcaaagtgcgcctcatcaacaaa
gagacgggcgaagtaaaagagcaagaagtctttatgggcgacttcccgctcatgaccgaa
acgggtacctttatcatcaatggcgcagaacgcgtaatcgtcagccagttggtgcgttca
cctagtgtgtattataacacgaaagcggacaagaacgggaaaacaacttacacggcgacg
gtgatcccaaaccgcggtgcgtggctggagtttgaaaccgacgccaaagatattatatat
gttcgcatcgaccgcacgcgcaagattcctgtgacggttctgttacgcgcgcttggcttt
agtagcgatgcggaaatcattgacttgctaggggatgacgaatacattcgtaacacccta
gacaaagacaacacaggaaacactgaaaaagcactgattgaaatctacgaacgtttgcgt
ccaggcgaaccgccaacagcggaaaacgctcgcagcctcttatacgcccggttctttgat
ccgaagcgttatgatttggccgctgtgggacgttataaaatcaataaaaaactgcacatc
aaaaatcgtttgctcaatcagaagttggctgagcctgtcgtgaatccggaaacaggtgag
atcttggcggaaacagggacggtgctggaacgccgcgtcctagacaaactccttccgtat
ctgacaggcgagaaggcatttggccgcaaggagcacaaagtgcgtggaggcgttcccgat
gatgggccgatctcgttgcaagctgtgcacatctttgcgcccaatgacgagagcaaagtg
accaaagtgatctccaatgcagaagtatctgatgagatcaaacatattaccccgtctgac
atcatcgcttcgatcagctatttcgtcaatttgctgtacggagtgggaagcacggatgat
atcgaccatttgggcaatcggcgcctgcgttctgtaggggagctgttgcaaaaccagttc
cgcatcggtttgtcgcggatggagcgggtagtgcgcgaacggatgtcgattcaagacgcc
aacgcgatcacaccgcaagcgttgatcaatattcgtccggtcatcgcggcaattaaagag
tttttcggtagtagccagttgtctcagttcatggaccaaaccaacccgttggctgagcta
actcacaaacgccgtctgtcggcgcttggtcctggtggtttgacccgggagcgcgcaggg
tttgaagtgcgtgacgttcaccactcacactatggtcggatgtgtccgatcgaaactcct
gagggtccgaacatcggtttgatcaactccttgtcgacatttgcgcgtgtcaatgagtat
ggctttatcgaaaccccctatcgtcacgtcgatcccgacacgggtcaggtgacggatcgg
attgatttcctcacggcggatgaagaggacaactactatgtggcgcaggctaacgcacca
ctaaatgaagacaacaccttcgccgatgatatggtgacggtccgccatcgttcggagatt
atcaacgtcccccgcgaccgggtggattatatggacgtttcgcctaaacaggttgtgtcc
gtggctacggcatgcatccccttcttggaaaacgacgactccaaccgcgcgctgatgggt
tcgaacatgcagcggcaagcggtgccgttgttaagaccagaggcgccgttcatcggaacg
ggtatggaacacgtggctgcccgtgactctggcgtgatggttcgtgcgaaacggccgggt
acggttgtccgtgtgtccgcagacgaaatttgggtacggcaagagcaagaaattgacggt
cgcctgattgaaggagacattgacaaatacaagctcaccaagttctctcgttccaaccaa
ggcacttgcatcaaccaacggccagttgtccgcacgggggaaaaagtaaaagtgggcgac
gtcctagcggatggcccatccaccgagcaaggggaaatggcattgggacgcaacgttgtg
gtggccttcatgacttgggaaggttacaactacgaggatgccattttgctgagcgagaaa
ttggtgaaggaagatgtctatacctcgattcacattgagaagttggaaagtgaagcgaga
gacaccaagctgggaccggaagaaattacccgcgacattccaaatgtgggtgaagatgcc
ctcaaaaacctcgatgagcgcggaattattcgtgtcggtgcagagatcaagccgggagac
atcctggtcgggaaggtgacgccaaaaggggtgaccgaactgaccgcggaagaacggctg
ttgcacgcgatcttcggtgagaaagcacgggaagttcgcgacacgtcactccgcgtgcca
cacggtcaagacggaatcgtcgtagacgtgaaagtcttcacccgtgaaaacggcgatgag
ttgccgccaggtgtgaatcaattggtgcgcgtctacatcgcgcagaaacggaaaatctcc
gaaggggacaaaatggctggacgccacggtaacaaaggggttatcgcccggatcatgcct
gaagaggacatgccgtttttgccggatggtacgccagttcaagttgtcttgaacccgctg
ggcgttccgtcgcggatgaatatcggtcaggtgcttgaggttcacttgggcatggcggcc
aaagcactaaacctgcatatggctacgcctgtctttgacggggcaactgaaaacgatgtg
tttgaaacgttgaaggaagcgggcttggatgaagacggcaaaacgattctttatgatgga
cgcacgggagagccgttcgaaaatcgcgtcaccgttggggtcatgtacatgatcaagttg
gcgcacatggttgatgacaaaattcacgcgcgttccacaggtccttactccttggttacc
cagcaaccgctcggtggtaaagcgcaatttggtggacaacgatttggtgagatggaggtg
tgggcgctggaagcatatggtgccgcgcacacactgcaagagattctcacggtcaaatca
gacgacgttgtcggccgcgtaaaaacctacgagtccattgtcaaaggtgaaaacgtgccg
gagccgggagtgcctgaatcattcaaggtattgatcaaagagttgcaaagcttgggtatg
gatgtgaaaatcctttccgaagacgagcaagaaattgagatgcgtgaattggatgaggat
gaggaatcggcaagtgataagctcggttttgatctgcttgaggaggatactgctcactca
aactcttga
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