Limosilactobacillus fermentum IFO 3956: LAF_1489
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Entry
LAF_1489 CDS
T00699
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAF_1489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfe03021
]
LAF_1489
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_1489
Enzymes [BR:
lfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAF_1489
Transcription machinery [BR:
lfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAF_1489
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAF_1489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
SpoIVA_ATPase
Mg_chelatase_C
DUF2325
Motif
Other DBs
NCBI-ProteinID:
BAG27825
UniProt:
A0ABF7R4P2
LinkDB
All DBs
Position
complement(1694148..1695092)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEFEKPNIHKVEETDNYGKFVVEPLERGYGTTLGNSLRRVMLASLPGAAITSIQIDGVL
HEFSTVQGVTEDVTQIILNLKQVALKIDSEDAKDLEIDVKGPAEVTAADIQGDGDVTILN
SDLHIATVSDGAELHVKMTADKGRGYSSADDNKTRMEGLAIGVLPIDSIYTPIERVNYTV
ENTRVGQSNDYDKLTLDVWTNGSLTPTEAISLAAKILTEHLTMFVNLTEEAQVTQVMVER
EETHQEKVLDKTIEELDLSVRSYNCLKRADIQTVKDLTERTEADMMKVRNLGTKSLDEIK
LKLAELGVGFRQED
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaatttgaaaaaccaaacatccacaaagttgaagaaacagacaactacggtaag
tttgtcgtagaaccgttggaacgcggttacgggacgactctgggtaactctcttcggcgt
gttatgctggcatccctgccaggggcagccatcaccagcattcaaattgatggtgttctg
catgaattcagcacggttcaaggggttacggaagacgttacgcagattatcttgaactta
aagcaagttgctttaaagattgattctgaggacgctaaggaccttgaaattgacgttaag
ggtccggccgaagtaacggctgccgacatccaaggtgacggcgatgttactatcctgaac
tctgaccttcacattgcgacggtttccgacggtgccgaattgcacgttaagatgaccgct
gataagggtcgtggttactcatctgctgatgataacaagactcgtatggagggcttggca
attggtgtcttaccaattgattccatctacaccccgatcgaacgtgttaactacacggtg
gaaaacacccgggtggggcaaagcaacgactacgataagctgacccttgacgtttggact
aatggttccttaacgccaaccgaagcaatcagtcttgctgctaagatcctcactgaacac
ctgacgatgttcgtcaacctcaccgaagaagcacaagtaactcaagtgatggttgaacgg
gaagaaacccaccaagaaaaggtgcttgacaagaccatcgaagaacttgacctgtctgta
cgttcatacaactgtttgaagcgtgctgacatccaaaccgtaaaggacttaactgaacgg
accgaagccgacatgatgaaggttcggaaccttgggacgaagtcattggatgaaatcaag
ctcaagttggctgaacttggcgttggttttcgccaagaagattaa
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