Leptospirillum ferriphilum ML-04: LFML04_1588
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Entry
LFML04_1588 CDS
T02319
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LFML04_1588 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfi03021
]
LFML04_1588 (rpoB)
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1588 (rpoB)
Enzymes [BR:
lfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LFML04_1588 (rpoB)
Transcription machinery [BR:
lfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LFML04_1588 (rpoB)
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LFML04_1588 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AFS53798
UniProt:
J9ZDB1
LinkDB
All DBs
Position
complement(1522629..1527785)
Genome browser
AA seq
1718 aa
AA seq
DB search
MNKKTKIDRHFFGLGQQYLDVQDLIEIQKKSYDRFLQLDVDPEQREDWGLQSAFLSVFPI
EDYNGNIRIDFLEYSLGEPKYNEREAIERGMTHAAPLKIKVRIAVLEKNKENDRPKSFVS
PHIQDSTVKTLREQEIYLGDLPLMTSKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRV
AGTPLFTSRIIPYRGSWVDFEYDPKDNLFVRIDRKKKFPATVMLKALGLTASNIIREYYS
PETLFIEPGVPQIVAFYPFAPGESLPFQLRDHEGPIFREETLPSDLAELNRILKDRTDLT
IRFHSSETGSELHISDVKVHSDSKNLGLFIPLNSILTSIKKTEYASPELHKLLEELNNSL
KKRSEFFSGELLNAKALLSLFELHSKANENLLHTVIPFQSKTKEFSVYQPMTVFRCTELS
ADAPIPFRIVSRTAKEEGDRIRFVDETVLNEREPLSKENVRLLLKSKNIGTIHHRSKKFY
SISLREDKNQNLFTLLEALPEKEIDEYYAAEEILDPSDFTKTLVTPTQPLGSKDFDKNRK
PLLQILFEKGVQKLEAYIVPLNQRGRAVIHQTLSGDKITSVENEKSYFLRYLLSKGLSSE
QITIALANRFLPYEEIVVQSKKRRFFVRIGAKATFKLISDDGEVLLAEGAVMTPEMASAI
KSNGQAILVRGKNDEVSVSMQMESDILGEKLVLTSKDQVKPEDLLSKVLLFPMGETRKGY
PLRSVGESSEFEDIDLAKKGKHEILPLVTVSSVKMGELFWELVDLGKHPHRVESDPAVIE
IYKKIRPGEVPHVETARQFFEQTFFNTKRYDLSSVGRLKINSKLGIKENLNNRLLTKNDV
VEVIRYMVGLLENKGEVDDIDHLGNRRVRSVGELLENQFRVGLVRMERAIKERLNLGDPD
AIISTDLINAKPVSAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLTRERAGF
EVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRKVEDGKVLPEIIY
LSAMDGDKYIIAQANTPVDETGKFIESHITARHKGDFVSVSVDRVQFIDVAPQQIVSVAT
AMIPFLEHNDANRALMGSNMQRQAVPLLRASAPVVGTGMERIVARDSGYVIYAEDDGQVT
NVDGTRIAIRYQGHDKPKEYNLIKFQRSNQNTCLNQKALLAVGTKVKKGDVIADGPSTDR
GDLAMGQNVLVAFMPWGGYNFEDAILVSERLIKDDMFTSIHIEEFELEARETKQGKEEIT
RDIPNLSEEALRNLDESGIIRIGAEVKPGDILVGKVTPKAETQLTPEERLLRAIFGDKSA
NWKDASLTVPAGIEGIVVDVRILSRKGVEKEEFPAPMSNQDVTVLTKSYQDDLRELESSK
NQKIRKFLIGKVIKEDILDSETGDVLLKKKRRLTQEILEKLSDLSIITLSDPKEQDELLS
IERETKEKIEAIQLRHDERIGRLKRGDELPPGVLKLVKVYIAMKRKLSVGDKMAGRHGNK
GVVSRILPMEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAGKMLDVHFATPVF
DGASEAEIKEQLKKAQLPESGQTVLYDGKTGEPFERPVTVGVMYMLKLHHLVDDKIHARS
IGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVSGRSRMYEA
IVRGENYLEPGLPESFNVLIKELQSLALDIELLKTKEK
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaaacgaaaattgaccgccatttcttcggactcggacaacaatatctcgat
gttcaggatctgattgaaattcagaaaaagtcgtatgaccgattcctgcagctcgatgtc
gatcctgaacaacgtgaagattggggtctacagtcggcgttccttagcgttttccccatc
gaggactataacggtaatattcggatcgattttttggaatattctcttggtgagcctaaa
tacaatgagcgtgaagccattgaaagagggatgacccacgcggcaccgcttaaaatcaaa
gtccgtatagcggtattggagaagaataaagagaatgatcgaccgaaatcttttgtatct
ccccacatccaagattcgactgtcaaaactcttcgggaacaggaaatttatctcggtgat
cttcctctgatgacctctaaaggaacgtttattattaatggcacagaaagggtggttgtc
agtcagcttcaccgttctccgggcgtcttcttttctcatgacaagacaaagacgcgtgtg
gctggaacacctctctttacttcccgaatcattccttatcgcggttcatgggttgatttt
gagtatgatccgaaagacaaccttttcgttcgaatagaccgtaaaaagaagtttcctgca
actgtcatgttaaaagcccttggtttaacggcttcaaatattatccgtgaatattattca
ccggagaccttgtttattgagccaggggttccccagatagttgctttttatccttttgct
ccgggagagtcgctcccttttcagctaagggatcacgaaggtccaatttttagagaagag
acattaccctctgaccttgctgagctgaatcgcattttaaaggatcgcactgatctaacg
attcgtttccatagttctgaaactggaagtgaacttcatatttcagacgtaaaggttcat
tcagactcaaagaatcttggtctttttattccactcaactcgattttgacatcgataaaa
aaaacggaatatgcatccccagaactgcataagcttcttgaggaattaaataatagcctc
aaaaaacgatcagaattcttttctggcgaattgctgaacgcaaaagccttgctttctttg
tttgaactgcactcaaaggcgaatgaaaatcttcttcatacagttattcctttccaatca
aagacaaaagagttttccgtctatcagcctatgacggtatttcgttgcacagaactttct
gcggatgcgccaattccatttcgtatcgtttctcggactgcgaaagaggagggagaccgg
atcaggtttgtggatgaaactgtgctcaacgaaagggaacctctctctaaagaaaatgtt
cgtcttcttctaaagtcgaagaatatcgggacgatacatcatagaagcaagaagttttac
tcgatctcacttcgggaagataaaaaccaaaatctcttcactcttcttgaagcacttcct
gaaaaggaaatcgatgaatattatgcagcggaagaaattctggatccgtctgattttaca
aaaacccttgttactccgacccagcctcttggctccaaagatttcgataaaaacaggaag
cccttgctacagattctgtttgagaaaggagtccagaagctggaggcttacattgttccc
ctgaaccaaagaggaagagcggtaattcatcagactctgtctggtgacaagattacatcc
gttgaaaatgagaaatcctatttccttcgatatctcctgtctaaaggactttcttctgag
cagataacgattgccttggccaatcgattccttccttatgaggaaatcgttgttcaaagt
aaaaaaaggcgtttttttgttcggataggggcaaaagcaacctttaagctgatttccgat
gatggagaagtccttcttgccgaaggtgcagtaatgactccggaaatggcatctgcaata
aagtccaacggacaggctattcttgttcgtggaaaaaatgatgaagtttctgtttcgatg
cagatggaaagcgatattttgggagagaagctggttctgacaagtaaggatcaagtcaag
cccgaagatcttctttccaaagttcttctatttccaatgggagaaacaagaaaaggttat
cctcttcgctccgttggggagtccagcgaatttgaggatattgatctggccaaaaaagga
aaacatgaaattcttccccttgtaacagttagcagcgtcaagatgggtgaactcttttgg
gagcttgtcgatttgggcaagcatcctcatcgagtggagtctgatccagctgtcattgag
atctataaaaaaattcgtcctggtgaagttcctcatgttgaaactgccagacagtttttt
gaacagactttttttaatacaaaacgatacgatctgtcttccgttggtaggctcaagatc
aattctaagctgggaataaaagagaatcttaacaacagactcctgacgaaaaatgacgtt
gtagaagttattcgctatatggtcgggctcctggaaaataaaggagaggtcgatgatatt
gatcacttgggaaaccggcgagtcaggtctgttggtgagcttcttgaaaatcagtttaga
gtcggattggtccggatggaacgtgcgatcaaggaaaggctgaaccttggggatccagat
gcgattatatcgactgatttgatcaacgccaagcctgtttcagctattattaaagaattt
tttggttctagccaattgtcccaattcatggaccaaacaaaccccttggcagaggttacg
cataaaagacggctatcagccttgggaccaggtggtcttacacgcgaaagagccggcttt
gaagttcgtgatgtgcacgcaagccactacggtagaatttgtccgattgaaactcctgaa
ggtccaaatatcggacttataacttctttggcgacctttgctcgggtgaacgactttggt
tttatagaatcacctgtcagaaaagttgaggatggaaaagtcctcccagaaattatttac
ctttctgcaatggatggtgacaagtacatcattgctcaggcaaatactcccgttgacgag
acgggcaagtttattgaatctcatattacggcaagacataagggagactttgtctcggta
tcggtcgatagggtccaattcattgatgttgccccacagcagattgtttctgtcgcaaca
gccatgattccatttcttgaacataatgacgcgaaccgggcattaatgggttcaaacatg
caaaggcaggcggttcctttattgagggccagtgctcctgtggttggaaccggtatggag
agaatcgtagctcgcgattccgggtatgtgatttatgcagaagatgatgggcaggttact
aatgttgatggaacccggatcgccattcgatatcaaggtcatgataagccaaaggaatat
aatctcattaaattccaacgctctaaccagaatacttgtttaaaccagaaagcgttgctg
gctgttggtacaaaagtcaagaaaggggatgtgattgccgacggcccatcaacagatcgt
ggtgacctggcgatgggacaaaacgtcttggtcgcatttatgccatgggggggatataac
ttcgaagatgcgattcttgtcagtgagcgactgattaaagatgacatgttcacttccatc
catattgaagagtttgagcttgaagcaagagaaacaaagcaaggcaaggaagaaatcaca
cgtgatatccctaatctgtcagaagaagctttaagaaatcttgatgaaagcggaatcatt
cgaatcggagcggaagtcaagcctggtgatattttggtgggaaaggttactcctaaggca
gagacgcagctgacaccggaagagcgtttgctccgagcaatttttggagataaatcggca
aactggaaagatgcatctttgactgtcccggccggaattgaaggtattgttgttgatgtc
aggattctttcccgaaaaggagtggaaaaagaagagtttccggccccaatgtcaaatcag
gatgtcactgtattgaccaaaagctatcaagatgatttaagggagctcgaaagttctaaa
aatcaaaaaattcgaaagtttctcattggcaaagtcattaaagaagacattcttgattct
gaaacaggtgatgtccttctcaagaaaaaaagacgattgacacaagagatcctggagaag
ttatcagacctgtcaatcattactttatccgatcccaaagaacaggatgagcttctatcg
attgaaagagagacaaaggagaaaattgaagcaatacagttgcgtcatgatgaaagaatt
ggacgcttaaagcgcggtgacgagcttcctccgggagtcttgaagcttgtaaaagtctat
attgctatgaaacggaagctctccgtcggagacaagatggcaggtcggcatggaaacaag
ggtgttgtttcaaggatcttgccgatggaagatatgccatttcttccagatggcacccct
gttgatattgttttgaaccctcttggggttccgtcccgtatgaatgttggccagattttg
gagactcatttgggttgggcgggaaagatgcttgatgttcattttgctacgccggtattt
gatggggcgtcagaggcggaaattaaggaacaactgaaaaaagcccaattgcctgagtct
ggacagacagttctatatgatgggaaaacaggtgaaccatttgagcgccctgtaacggta
ggggtgatgtatatgcttaagcttcatcaccttgtcgatgacaagattcatgcgcgttcc
attgggccatactcacttgtgacacagcaacctttgggaggaaaagcccagtttggtgga
caaagactcggagaaatggaagtttgggcactccaggcttatggtgccgcctcgactctg
caggaattcctcacagttaagtccgacgatgtttctgggcggagtcggatgtatgaagct
attgttcgaggggaaaactatctcgaaccaggacttccagaatcgtttaatgttttgatt
aaagaactacagagtctggctttggatattgagctcctgaagacaaaggagaaataa
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