Lactococcus formosensis: LMK00_09620
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Entry
LMK00_09620 CDS
T08654
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lfo
Lactococcus formosensis
Pathway
lfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMK00_09620 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfo03019
]
LMK00_09620 (rny)
Messenger RNA biogenesis [BR:
lfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMK00_09620 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
USJ20059
UniProt:
A0A9Q8Y224
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Position
complement(1940155..1941771)
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AA seq
538 aa
AA seq
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MNVISLVLLVLLIVLVIAFIFYAQNIKKNKQDAESLFMQAENKANEITANAQRDAALVRK
EAEILRDEAEAFKKEARFNLREEEQKQRREIEDEFKQDRKELKETEQRLKQREEVLDRKD
DKLTNKERSLDSKEEALSKKTDTLNKREQELLEIEEKKQEELERIAALTNEEAKEIILSE
TRDGLTKEMAQLIRSSEEKAHAEADKRAKNIVSLAIQRVSSDSVAEQTVSVVTLPDDGMK
GRIIGREGRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPA
RIEELVEKNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVE
VANVAGNLAGEMGENVTLAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINT
IASHHGDTEPNSNIATLVAAADALSAARPGARRESIENYIKRLRDLENISTSFDGVESAF
ALQAGREVRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcatatcactcgttctgcttgtcttattgattgtattggttattgcctttatt
ttttatgcccaaaatattaagaaaaacaagcaagatgctgagagtctttttatgcaggca
gaaaataaggcaaatgagataacggcaaatgcacagcgtgatgctgctcttgtaagaaaa
gaagcggaaatcctgagggacgaagcagaagcattcaagaaagaagcgcgctttaatctt
cgcgaagaagaacaaaagcaacgccgtgaaatcgaagatgaatttaagcaagatcgtaag
gagttaaaagaaactgaacaacgcctaaaacaacgtgaagaagttctagaccgtaaggat
gataaacttacaaataaagaacgtagcttagactctaaagaagaagcactctctaaaaaa
actgatacactcaataaacgtgagcaagaacttttagaaattgaagaaaagaaacaagaa
gaattagaacgtatcgctgctttaacaaatgaagaagctaaagaaatcattcttagtgaa
acccgtgatggtttaacaaaagaaatggcacagcttattcgttcaagcgaagagaaagct
catgctgaagctgataaacgtgccaaaaacattgtttcacttgcaatccaacgtgtctct
agtgattcggttgctgaacaaacagtatcagtagttactttaccagatgatggtatgaag
ggccgaattatcggacgtgaaggtcggaatattcgtacctttgaagctttgacgggtatt
gatgtcattattgatgatactccagaagctgttgtattatctggttttgatccgattaga
cgtgaaattgcacgaatgaccttggagcaactggttcaagatggccgtattcaccctgca
cgtattgaggaacttgtcgagaaaaaccgcaaagcactagatcataagatgcgcgagtat
ggcgaacaagctgcctttgaagtgggagcacataacctccatccagacttaatgaaaatc
atgggtcgcttgcatttccgtacttcttatggtcaaaatgttcttgaccattcagttgag
gtggcaaatgttgccggaaaccttgctggtgaaatgggtgaaaatgtgactctcgctaaa
cgtgctggcttcctacatgatatcggtaaagcattggatcatgaagttgaaggtagccac
gttgagattggtacagaacttgcacgtaagtacaaggaaaatccaattgttattaatacc
attgcaagtcaccatggcgatacagaaccaaacagtaatatcgctactttggttgctgca
gctgatgctttaagtgcagcacgtcctggagcacgtcgtgagtcgattgaaaattatatt
aaacgactccgtgacttagaaaatatctcaacaagttttgatggtgttgaaagtgcattt
gccttacaggcaggacgcgaagttcgtgtcatggttaaaccagagaagcttacggatgat
caaatcgtaattcttgcacgagatgtgaaaaatcgtattgaagatgaaatggattatcca
ggaaatattaaagtcacagttattcgtgaaacacgtgcgattgactacgccaaataa
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