Lottia gigantea (owl limpet): LOTGIDRAFT_143542
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Entry
LOTGIDRAFT_143542 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_143542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_143542
03400 DNA repair and recombination proteins [BR:
lgi03400
]
LOTGIDRAFT_143542
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOTGIDRAFT_143542
Messenger RNA biogenesis [BR:
lgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOTGIDRAFT_143542
DNA repair and recombination proteins [BR:
lgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOTGIDRAFT_143542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
RQC
DEAD
RecQ_Zn_bind
PDF2_C
Motif
Other DBs
NCBI-GeneID:
20234705
NCBI-ProteinID:
XP_009052246
JGI:
143542
UniProt:
V3ZZV8
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
IVISPLISLMEDQVLGLKASNIPACLLGSAQENTARVKSELLRGEYRLLYITPEFACSGT
DILKTLNDEIGMDLIAIDEAHCVSQWGHDFRNAYRSLGQLKKQFPQIPIVALTATATLEV
RKDICSSLHLKKPTVTCTGFDRPNLFLSVANKSNIICDLRTQLVLQDKVLSFQGPTIIYC
PTKKSTMQVTEVLQGMKVPCLPYHAGLSLNERKKAHHQFVNDQVQVVVATVAFGMGIDKP
DVRKVIHYGAPKDIESYYQEIGRAGRDGFPSNCQVFYSAADFNVSRHFINEISNVKHQEH
KMEMLRKLQQYLSTTGCRRRILLAHFEGKTLEDIGGSDKCCDNCRSNSTVGWNKTVDLTA
DVQDYSSEAKLFYNAMEALNSRFGMTVIIQFLGGSNSQKVSKFYNKPGYGKGKHKTQKWW
KAFGKCLLVEGYLKEKAIEGGFGSTIEISNKGFDWLNQSTSQAIKLQPSHDLLNEEKNTT
IKPSFNITVK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atagttatttcccctttgatatctctaatggaagatcaagtccttggcctcaaggcatct
aatatcccagcatgtttattgggttctgctcaagaaaatactgctagagtgaaatcggaa
ttactcagaggtgaatacaggctactgtatattactccagaatttgcctgtagtggtact
gacatcctcaaaacacttaatgatgaaataggtatggacttgatagctatagatgaagct
cattgtgtctcgcagtgggggcatgattttagaaatgcttatagatcacttggtcaactg
aagaaacagttccctcagattcccatagtagccctgacagcaacagccacattggaagta
agaaaagatatctgtagttctttacatcttaaaaaacctactgtaacatgcactggcttt
gatagaccgaacttatttctatcagtagccaataaaagtaatattatatgtgatctgcgt
acacagttagttctccaagataaagtgctaagttttcaagggcccaccataatatactgt
cctactaaaaaatctaccatgcaggttactgaagtgttacagggtatgaaagttccctgt
ctaccctaccatgctgggctatctcttaatgaacggaagaaagcacatcatcagtttgtg
aatgaccaagttcaagtggttgtagcaaccgtagcctttggtatgggaattgacaaacca
gatgtcaggaaagtcatacactatggagcaccaaaagatatagagtcttactatcaggaa
attggtcgagctggaagagatggtttccctagcaactgtcaggttttctattctgctgct
gattttaatgtctccagacattttataaatgaaatcagtaacgtcaaacatcaggaacat
aaaatggaaatgttacgaaagttgcagcaatatttaagcactactggctgtagaagaaga
atattattggcccattttgaaggaaaaactttagaagatattggaggttctgataaatgc
tgtgataactgcagaagcaattcaacagtaggttggaataaaacagtggacctgacagct
gatgtccaagattacagttcagaggccaaactcttctataatgctatggaggctttgaac
tcacgatttggtatgactgttattatacaattccttggtgggtcgaacagtcagaaagtt
agtaaattttacaataaaccaggctacggcaagggcaagcataaaacacagaagtggtgg
aaagcttttgggaaatgtttacttgtggaaggatatttaaaagaaaaggccatagaagga
ggctttggatctacaatcgaaatttctaacaaaggttttgattggttaaatcaatctacc
tctcaagcaatcaaactacaaccgtcacatgacttgttgaacgaagaaaagaataccaca
atcaaaccttcctttaacattactgtcaagtaa
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