Lottia gigantea (owl limpet): LOTGIDRAFT_239532
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Entry
LOTGIDRAFT_239532 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_239532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_239532
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LOTGIDRAFT_239532
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LOTGIDRAFT_239532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
WND
Motif
Other DBs
NCBI-GeneID:
20251084
NCBI-ProteinID:
XP_009055214
JGI:
239532
UniProt:
V3ZRP3
LinkDB
All DBs
Position
Unknown
AA seq
2288 aa
AA seq
DB search
MNLDSLSCALAEISYSVANLTKKNFKAVVTEINHLVSQHGAEADRHLFRCLFSHIEFGGD
GKGSKDFHQTQFLIQECVNLLCKPDFVSILCNAIDNPFQHQKSLKPNSQLFSNISKVLKL
SRVQEVAFGLALLNSTNPGISTQAAQFVKQKVPDLLHSYVDADSSGRQEGGLQDTAVETL
HFLLTHLLHGKGQFGVGVEQKEALLKALRRDFPRDRVPAILNLILYPEIEDIPTNKLFDT
TILPSSIMVASLEYLIQESGVGCTATVEECRSKLMQYGVKKITPGSVARVLGMMAQYPNG
VNERGEVPPQTVTGWNDTPGETIWNEEIFVMVVKDLAPHLNWKDVVANLDYPEFMVSNSK
GLRLLVQALFRGLQAIFPVEYIYKSWNNVGGQLSFINQALRSPDIFSFADYPGDTVVIDI
LKTTPNEDDRDVKTWKSLDLVETLLRLSEVGHYQQIHDLMKVPIQKCPDILVLALLQTKP
SWNILKQELIAKLMPIFLGSHTNSAVVLHYAWHHQGHSNNIRTLIMHSMAEWYMRGDQHD
QMRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRRGYLKLDKWLSDKISEHKEPFV
QACVSFLKRRYPQLVGGPIKEDLAQMKSQQLLPETVATMLTHLKTWSVHVSQELADAITT
MYNNASSLFKARQGQQPPGPNTTQFPSTNPLDVLSGIGGILAHNPTSSQTSAASAFPQLP
GMNTAAPGSPSKTFPGVTSTNPTAVNPIQSLPSQFQTLNTGGGPPGDMSGIFPEMNLNQQ
FSKDVEDKANTYFQQIYNMPPHLTMTIDDVLEMLKRFKDSQNKMERDVFACMLRNLFEEY
RFFPQYPERELHITALLFGGIIEQGIVTYWTLGIALRYILEALRKPHGSKMYYFGIAALD
KFKSRLKDYPQYCQHLACIPHFSRSPQHLIEYVEYGARSKEPPHMPQAPCSLSQSMAGLT
IPAPKLTPAVSAPTPSTPTSSGEISKAATFQKPSIATATNIDTLLAGQQKDEVAVPPEAL
QDKVFFIFNNLSQSNMGQKGEELKEQIGTEYIPWCSQYLVMKRASIEPNFHTLYSGFVDV
LNIPELTDLITRETFRNIKVLLRSDKGVANFSDRTLLKNLGHWLGMLTLAKNKPILQTEI
DLKSLIYEAYQKGAQELLYVVPFSAKVLESCARSKVFKAPNPWTLGIMNVLAELHMEPDL
KLNLKFEIEVLCKTLSIDINDLKPTNYLKDPMRIATIEPQLSAPRIQDPVTTPTPQPFGA
TTPSLPPQPQYSFSEINTHSLSGLAQHIIINDQIALFYTNPNLKQYVRPALEKAVQELLP
PVVERSIKVALTTCEQTVKKDFALDPDEGRMRSAAHSMVRNITAGLALITCREPLFISIS
NNLKTAFLSTLRDVAINVIEDAVQTLAQDNTELACAFIQKTAVDRAIPEMDKRLATEYDL
RKHARSEGRRYCDPVVLTYQAERMPEQIRLRVGGVTPQQIAVYEEFARNIPGFLPLTENT
NLPPGITKPVPSFAQDDVMMIYEKIIREIETHLQCMMNMSTANPMMAQLNSLMDSIMLAR
QNREVISAAALVKKAVEGLLDQYTMSSATDQELFFRYRECHLLVLRGLQDPRAYGPQWAI
KEVTNCLLHCRPEHRYNIDAVDLLIRSQLVNLQEYDNSLAVLLTGVSNTPVQFAMQIIQR
YVLDEKSPVPDAEFPNTIAALSHKVSRSARPQEGLTNLLEMIRQKSQQNTDNLGLDRNST
SAYSSMLQSGINQAKEFDDPPGLHEKTENLLIEWVNMYHSPQAGRDRTKAFFSFVQYMHQ
QGILKTDDLISRFFRLCTEMCVDLCYRALVEQNQSPTLIRAKCFHTLDAFVRLIALLVKH
SGDSGNTVTKINLLNKILGIITGVLMQDHEVRGTEFQQLPYHRLFIMLFIELNAPEPILE
SINMQVLIAFCSVFMFLRPAKAPGFAYAWLELLSHRVFIGRLLALTPQQRGWGMYAQLLI
NLFRFLSPFLRNAELQKPTHLLYKGTLRVLLVLLHDFPEFLCDYYYAFCDVVPPNCIQMR
NLILSAFPRKMRLPDPFTANLKVDSLPDITVEPRILPNYVQMIQPASFKKDLDSYLQTRA
PITFLSELRSSLQQNPEPNSHLHYNIPLINALVLYVGTQAISSIQAKGQVTSMGTIAPSS
HVDIFQYLAVNLDTEGRYLVLTAIANQLRYPNSHTHYFSCCMLYLFAQANNEQIQEQITR
VLLERVIVNRPHPWGLLITFIEMIKNPTYKFWNHEFVHCAPEVEKMMEGVAQSCLHTTRE
PENHSEVH
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagattccttatcatgtgctttagccgaaatcagttactctgtggccaatcta
acaaagaaaaatttcaaggcggtagtgactgaaatcaaccatcttgtaagtcaacacgga
gcggaggccgatagacatttatttcgctgccttttttctcacatcgaattcggcggagac
ggaaaaggcagtaaagactttcatcagactcaatttttaattcaagagtgtgtaaatctg
ctttgtaaaccagattttgtatccatattgtgtaacgcaatagacaatccctttcaacat
cagaaaagtttgaagccaaacagccagcttttttctaatattagtaaagttttgaagtta
agccgagtacaagaagtagcgtttgggttagccttattaaactcgaccaatccaggcatc
agtacccaggctgctcagtttgtgaaacagaaagtaccagatttattacattcgtatgta
gacgctgattcatcaggtagacaagaaggcggtttacaggatactgctgttgaaaccctc
cattttcttctcacccatttacttcatggaaaaggacaatttggtgtcggtgtagaacaa
aaagaagctctccttaaagccttaagaagagattttccacgtgatcgagtaccagctata
ttaaatcttattttatacccagaaatagaagatatccccacaaataaactatttgacact
accattttacccagttcaataatggtagcctcattagagtacctaatacaagaatcgggc
gtaggatgtacagcaacggtagaagaatgtcgcagcaaattgatgcaatatggagtgaag
aaaatcacccctggttctgtggccagggtgttaggaatgatggcccaatatcccaatggt
gtgaatgaaaggggggaggtgccaccccaaacagttactggatggaacgatacaccaggg
gagaccatttggaatgaagaaatctttgtcatggtcgtcaaagacctcgcaccacatcta
aactggaaagatgttgtggccaacttggattatccagaatttatggtgtccaacagcaaa
ggtttacgtctgttagtacaagccttatttagaggactgcaagccatttttcctgtagaa
tacatttacaaatcatggaacaatgtgggaggtcaactttctttcatcaatcaagccctc
aggtctccagatattttcagctttgccgattatcctggggatacagtcgtcatagacatc
ttgaaaactacaccaaatgaggatgatcgtgacgtcaagacctggaagtccctggattta
gtggagacgttgctgagattgtcagaagtcggccattaccaacaaattcatgacttgatg
aaagtaccaattcagaaatgtccagatatattagtgctagcattattacaaaccaaacca
tcatggaatattcttaagcaagaattgattgccaaattgatgccaattttccttggaagc
cataccaattctgcagtggttcttcattatgcctggcatcatcaaggtcattccaataac
atcagaactctaataatgcattcgatggctgaatggtatatgagaggagaccagcatgat
caaatgagattatccagaattttagacgtagctcaagacttaaaggccttgtcaatgtta
ttaaatgccaccccatttgcatttgtcattgatttggcctgtttggcttcgagaagagga
tacctgaagttagacaaatggctctcagacaaaataagcgaacacaaggaaccctttgtt
caagcctgtgtgagttttctgaagagaagatacccccaactggtagggggaccgataaaa
gaagacctggcacagatgaaaagccagcagcttttgccagagacagtagccaccatgttg
actcatcttaaaacgtggtctgttcatgtttctcaagaattagcagacgccatcacaaca
atgtacaacaatgccagttccttattcaaagccagacagggacaacaacccccaggacca
aatacaacccagtttccctcaaccaacccattagacgtcctgtcaggaattggtggaatc
ttggcccacaacccaacatcatcacagacttctgcagcatctgcattcccacaattgcct
ggcatgaacacagcagcaccaggctctccatctaagactttcccaggtgtcacctcaacc
aacccgacagcagtcaaccccatacagtcattaccatcccagttccagacactcaacacc
gggggcggtcctccaggagacatgtctggcatcttccctgagatgaatctcaatcaacag
ttcagtaaggatgttgaagacaaagccaacacatactttcaacagatatacaacatgcct
ccgcatctgaccatgaccattgatgatgtattggaaatgctgaaaaggttcaaagactct
cagaataaaatggagagggatgtatttgcctgtatgctgagaaacctatttgaggagtac
agatttttccctcaatacccagaacgagaactccacattactgccctactctttggagga
attattgagcaaggaattgtcacttattggactcttggaattgctctaagatacatcctg
gaagctttacgtaagcctcatggcagcaagatgtactattttggtatagcagcgttggac
aaattcaaatccagattaaaagattaccctcaatattgccagcacttagcctgtatccct
cacttctctagatccccacaacatttgattgaatacgtggagtatggtgctagatctaag
gaaccaccccacatgccacaagcaccctgttcactgtctcagtcaatggcagggctgaca
atacctgctcccaaattaacaccagctgtttctgcaccaacaccatcaacgccaacatcg
tctggagaaatttccaaagcagctactttccagaagccgtcaatagctactgctaccaat
attgacactctgttagctggacagcagaaggatgaagttgctgttcctcctgaagcactt
caagacaaagttttcttcatctttaacaatctgtctcagtccaacatgggtcagaaggga
gaagaactcaaggagcaaataggaacagagtacatcccctggtgctcacagtacctggtc
atgaaaagagccagcattgaaccaaacttccacaccctttactctggttttgtggatgtt
ttaaatatcccggagttaacagatctcatcactagagaaaccttcaggaacatcaaagtc
ttgctgagaagtgacaaaggagtggctaacttctctgacagaactcttctgaagaatctg
ggacattggcttggaatgctgaccttggctaaaaataaacctattttacaaacagaaata
gatctcaaatcattgatatatgaagcttaccaaaaaggagcccaggaacttctatatgtt
gtacctttctctgctaaagtcttagaatcctgtgctaggagtaaggtatttaaggcacca
aatccatggacattaggaatcatgaatgtcttggcagaattgcacatggaacctgatttg
aaattgaatttgaagttcgaaattgaagtcctctgcaagacactgagcattgacatcaat
gatctaaaaccaaccaactacttgaaggatccaatgagaattgccaccatagagcctcaa
ctatctgctccaagaattcaagatcctgtaacaacaccaacaccacagcctttcggtgca
acaacccctagtctaccacctcaaccacagtacagcttcagcgaaatcaacacccattca
ttgtctggtctagctcaacacatcatcatcaatgatcagattgctctgttttacaccaac
cccaatttgaagcagtatgtcagaccagcattagaaaaagcagtccaagagttgctgcca
ccagtggttgaaagatctatcaaggtagctttaacaacttgcgaacagactgtcaagaaa
gactttgcccttgatccagatgaaggaagaatgagatcagcagctcactccatggttaga
aatataacagctggtttggctctcataacttgtcgagaaccactcttcatcagcatcagc
aacaacctgaagacagccttcctttcaactctgagagatgtagctatcaatgtcatagaa
gatgctgtgcaaacattagcacaagacaacaccgaattagcttgtgcttttatccagaag
accgcagtggatagggctatacctgaaatggacaaaagattagcaacagaatatgatttg
agaaagcatgctagaagtgaaggaagaagatattgtgatcctgtggttttaacatatcaa
gcagaaagaatgccagaacagatcagattaagagttggtggagtgacgcctcaacaaatt
gcagtttatgaagaatttgctcgtaacatccctggcttcttgccattgacagaaaacacc
aatttaccacctggcataaccaaaccagttccatcatttgcccaggatgatgttatgatg
atttatgaaaagattattagagaaatcgaaactcatttacagtgcatgatgaatatgtca
actgccaacccaatgatggcacaactcaacagtttaatggactccatcatgttggcccgt
caaaacagagaagtgatctctgctgctgcattggtgaagaaagcagtggaaggacttttg
gaccagtataccatgtcaagtgccacagatcaagagctcttcttcagatatagagaatgt
catctcttagttcttcgaggtcttcaagatccaagagcatatggtccacaatgggctatt
aaggaagtcaccaactgtctcctccactgcagacctgaacacagatacaacattgatgct
gtggatctactgatcagaagtcagctggtcaacttgcaagaatatgacaactctttggca
gttctcctgactggagtcagcaatacaccagtacagtttgctatgcagattatccaaaga
tacgttctggatgaaaagagtccagttcctgatgcagaattcccaaatactattgcagct
ttgagccataaggtttccagatctgctcgcccacaagagggactgacaaatctccttgag
atgattcgacaaaagagtcaacagaatactgacaatttgggattagacagaaattcgact
tcagcttactcatccatgctgcagtctggcatcaatcaagctaaagaatttgatgatcca
ccaggcctccatgagaagacagagaacctgctgatagagtgggtcaacatgtaccactcc
ccacaagctggacgtgatcgcaccaaagccttcttctccttcgtccaatacatgcatcaa
caaggcatcttaaagactgatgatttgatctcaagattcttcaggctctgtacagagatg
tgtgtagatctctgctacagagctttggtggaacagaaccaaagtccaacactgattaga
gccaagtgtttccacactctagatgcttttgtacgtttgattgctctactggtcaagcac
tctggtgattctggtaatactgtaaccaagatcaacttattgaataaaatcctgggcatc
attactggggttttaatgcaagatcatgaagttcgaggaactgaattccaacaactacca
tatcatagactcttcatcatgctctttatagaactcaatgctccagaaccaatcttagag
agcatcaatatgcaggtgctgattgctttctgctcagtcttcatgtttctacgtcctgct
aaagctccaggatttgcttatgcctggttggagctgttgtctcacagagtgttcattgga
cgcctcctggctttgactccacagcaaagaggatggggaatgtatgcacagttgctgatt
aatctcttcagatttttgtcacctttcttaagaaatgcagagcttcaaaaaccaacccat
cttctgtacaaaggaacattgagagttctactggtcctgcttcacgactttccagagttt
ctctgtgattactactatgctttctgtgatgtagtaccaccaaattgcatccagatgagg
aacctaatccttagtgcttttcccaggaaaatgagacttcctgatcctttcactgctaac
ctgaaggtggatagtctaccagatattacagtggagcccagaatactacccaattacgtc
caaatgattcaaccagcctcctttaagaaggatttggactcctaccttcagaccagagct
cccatcactttcctgtctgaactacgcagcagtttacaacagaacccagaaccaaacagt
catctgcattacaatataccattgatcaatgctctggttctgtatgtgggaactcaagct
atatcatcaatccaagctaaaggtcaggttaccagtatgggcaccatagctccatcatct
catgtagacatcttccaatacctagcagtaaacttggacacagagggaaggtacctggta
ctcactgccatagctaatcaactacgctatcccaacagccacacccactacttcagctgt
tgcatgctctacctgttcgctcaagccaacaacgaacagatccaagagcagataactcga
gtcttactggagagagtcattgtgaatcgcccacatccttggggattactcattacattc
atcgagatgatcaagaatccaacttataaattctggaatcatgagtttgtccattgtgct
ccagaggttgagaaaatgatggagggagttgctcagtcctgtctacatacaacacgtgaa
ccagaaaaccattctgaagttcattaa
DBGET
integrated database retrieval system
